Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03408 ATGGTGGAAGATGAAGATTATAGAAGAAAAGCCAAGATTGCTGTTATAGCAATTATTGTACTTGCTTCTCTTGCTGTTTTTGCTTCTTTTGTTGCCTTTGCTTACTATTGCTACATCAGTAACAAAGTTTCCAAGCGTAGGCGCAAAAGCCATAAAGTCGAAGATGCCAACGTTAACGAGAAAAGTGACTTTGCAAACCTGCAAGTTGTTGCCGAGAAAGGACTTCGAGTGTTCACTTTCAAGCAGCTACATTCTGCAACCGGAGGATTCAGCAAGTCAAATGTGGTTGGTCATGGTGGATTTGGACTTGTTTACCGTGGAGTTCTCAATGATGGAAGGAAGGTTGCGATTAAATTAATGGATCAGGCTGGAAAGCAAGGAGAAGAAGAGTTTAAAGTCGAGGTGGAATTGCTTACTCGGTTGCATTCTCCATATTTGCTTGCATTGCTTGGATACTGCTCTGATCATAATCATAAGCTGCTCGTGTATGAATTTATGGCAAATGGTGGCCTGCAGGAACATCTTTATCCTATCAGCAATAACAATTCAAGTGTTGTGTCCGTTAATCTAGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAAGGGTTTAGAATATCTTCATGAACATGTCAGTCCTCCTGTGATTCATAGAGATTTTAAGAGTAGCAACATCCTCTTGGACAAAAAATTTCATGCTAAAGTTTCTGATTTTGGATTGGCAAAGCTTGGATCTGATAGAGTCGGTGGACATGTTTCAACTCGCGTTTTAGGCACTCAGGGATACGTTGCCCCCGAATATGCACTAACAGGACATTTAACAACAAAATCAGATGTCTACAGTTATGGTGTTGTACTTTTGGAGCTTCTAACCGGCCGAGTGCCAGTTGATATGAAGAGACCTCCGGGAGAAGGCGTACTTGTTACATGGGCTTTGCCACTTTTGACTGATAGAGAAAAGGTTGTAAAGATTATGGATCCATCATTGGAGGGACAATACTCAATGAAAGATGTTATCCAAGTAGCGGCGATTGCGACAATGTGTGTGCAACCAGAAGCAGATTATAGGCCTCTGATGGCTGATGTTGTGCAGTCTTTGGTTCCATTGGTGAAGACTCAAAGATCTAACTCAAAAGTAGGCAGCTGCTCTAGTTTCAATTCCCCCAAGTTGTCTCCTGGCCCTACTAATCATCTAGTTAATGCAAATATGTAA 1218 0.4146 MVEDEDYRRKAKIAVIAIIVLASLAVFASFVAFAYYCYISNKVSKRRRKSHKVEDANVNEKSDFANLQVVAEKGLRVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLNDGRKVAIKLMDQAGKQGEEEFKVEVELLTRLHSPYLLALLGYCSDHNHKLLVYEFMANGGLQEHLYPISNNNSSVVSVNLDWETRLRIALEAAKGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGSDRVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVTWALPLLTDREKVVKIMDPSLEGQYSMKDVIQVAAIATMCVQPEADYRPLMADVVQSLVPLVKTQRSNSKVGSCSSFNSPKLSPGPTNHLVNANM 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03408 405 FunFam Receptor-like serine/threonine-protein kinase ALE2 166 385 - -
Trre12g03408 405 FunFam Serine/threonine-protein kinase PBS1 56 165 - -
Trre12g03408 405 CDD STKc_IRAK 96 371 - -
Trre12g03408 405 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Trre12g03408 405 PANTHER OS07G0668900 PROTEIN 52 378 - -
Trre12g03408 405 Pfam Protein kinase domain 91 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03408 405 Gene3D Phosphorylase Kinase; domain 1 49 165 - -
Trre12g03408 405 Gene3D Transferase(Phosphotransferase) domain 1 166 387 - -
Trre12g03408 405 SUPERFAMILY Protein kinase-like (PK-like) 72 368 IPR011009 -
Trre12g03408 405 ProSiteProfiles Protein kinase domain profile. 90 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03408 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Trre12g03408 405 MobiDBLite consensus disorder prediction 379 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03408 Trre-Chr12 49646620 49649487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03408 1 394 Receptor kinase-like Gene Family AT3G58690 77.215 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Trre12g03408 Pkinase 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03408 - - psat:127086543 717.998