Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03407 ATGCTTTTTTTCTTAGCTTGTTCTACCAATGCACAACTTATTGATAACTTCTATGGCAAAACTTGCCCTAGCCTCCAAACCATTGTGCGTAATACAATGACCAATGCTATCAAAACAGAAGCACGAATTGGTGCTTCTATACTTCGTTTGTTCTTCCATGATTGCTTTGTAAATGGATGCGATGGATCAATCTTATTGGATGACACTTCCACATTTACCGGTGAGAAAAATGCCGCACCTAATAAAAATTCAGCTAGGGGTTTTGAAGTGATTGATACAATTAAAACTAGTGTTGAAGCTTCTTGCAATGCTACGGTCTCTTGTGCTGATATTCTTGCACTTGCAGCAAGAGATGGAGTTTTTCTGCTTGGAGGACCCACATGGACAATACCACTTGGAAGAAGAGATGCAAGAACTGCAAGTCAAAGTGCAGCCAATAGCCAACTCCCTTCACCATTTTCTGACCTCTCCACCCTTACTACAATGTTTCAAAACAAAGGTCTAACAGCAAGTGATCTCACTGTCCTTTCAGGTGCACACACCATAGGACAAGGAGAATGTCAATTTTTCAGAACTCGAATTTACAATGAAACCAACATTGAAACAACCTTTGCAACCTCAAGAAAAGCAAATTGTCCTGTTTCTGGTGGTGACACTAATTTAGCACCTCTTGATACTCTCACTCCAACTAGTTTTGACAACAATTACTATAAAAACCTTGTTGCTAGCAAAGGTCTTTTCCATTCTGATCAAGTTCTTTTCAATAATGGATCTCAAGATAGTTTGGTTAGCACTTATAGTGCCAATGGTGTCAAGTTTTCTAGTGACTTTGCTCTTGCTATGATCAAATTGAGTAAACTTAGTCCTCTCACTGGGACTAATGGAGAGATTAGAAAGAATTGTAGGCTTGTTAATTAA 918 0.3878 MLFFLACSTNAQLIDNFYGKTCPSLQTIVRNTMTNAIKTEARIGASILRLFFHDCFVNGCDGSILLDDTSTFTGEKNAAPNKNSARGFEVIDTIKTSVEASCNATVSCADILALAARDGVFLLGGPTWTIPLGRRDARTASQSAANSQLPSPFSDLSTLTTMFQNKGLTASDLTVLSGAHTIGQGECQFFRTRIYNETNIETTFATSRKANCPVSGGDTNLAPLDTLTPTSFDNNYYKNLVASKGLFHSDQVLFNNGSQDSLVSTYSANGVKFSSDFALAMIKLSKLSPLTGTNGEIRKNCRLVN 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03407 305 FunFam Peroxidase 150 284 - -
Trre12g03407 305 SUPERFAMILY Heme-dependent peroxidases 13 305 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 FunFam Peroxidase 16 160 - -
Trre12g03407 305 PANTHER PEROXIDASE 72-RELATED 4 303 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 Gene3D - 16 302 - -
Trre12g03407 305 CDD secretory_peroxidase 12 304 IPR033905 GO:0004601|GO:0042744
Trre12g03407 305 PRINTS Plant peroxidase signature 279 292 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 239 256 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 86 99 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 105 115 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 171 183 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 124 139 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 22 41 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 46 66 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Plant peroxidase signature 223 238 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 ProSitePatterns Peroxidases active site signature. 44 55 IPR019794 GO:0004601
Trre12g03407 305 Pfam Peroxidase 29 268 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Haem peroxidase superfamily signature 225 240 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Haem peroxidase superfamily signature 106 123 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Haem peroxidase superfamily signature 124 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Haem peroxidase superfamily signature 44 58 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 PRINTS Haem peroxidase superfamily signature 172 187 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 ProSitePatterns Peroxidases proximal heme-ligand signature. 172 182 IPR019793 -
Trre12g03407 305 ProSiteProfiles Plant heme peroxidase family profile. 12 305 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03407 305 Gene3D Peroxidase, domain 2 150 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03407 Trre-Chr12 49628021 49629518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03407 11 305 Peroxidase AT5G05340 63.973 1.60e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03407 K00430 - gmx:100810392 484.567