Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03404 ATGGCTACATTTACTAAAGTGTGTGTTACATTTTCAATTCTAGTTTCTCTCTTTGCTTGTTCTATCAATGCACAACTTTCTCCTAACTTTTATGGAAGAACTTGTCCTTCCCTTCAATCCATTGTTCGTACTCAAATGATCAAAGCTATCAATAATGAAGCTAGGATTGGTGCTTCTATACTTCGTTTGTTCTTTCATGATTGCTTTGTCAATGGTTGCGATGGGTCAATATTATTGGATGACACTGCGACATTTACCGGTGAGAAAAATGCGGGACCTAACAAAAATTCAGCTAGGGGTTTTGAAGTCATTGATACTATTAAAACTAGTGTTGAAGCTTCTTGCAATGCCACTGTCTCTTGTGCTGATATTCTAGCACTTGCAACTAGAGATGGAATAGCTTTGCTTGGAGGACCCTCATGGATTGTTCCACTTGGAAGAAGAGATGCAAGAACAGCAAGCCAAAGTGCAGCCAACACCAATATCCCTTCACCATCATCTGACCTTGCAACTCTCACTAAAATGTTTCAAAACAAAGGTCTAACATTAAATGACCTTACAGTCCTTTCTGGTGCACACACCATAGGTCAAACAGAATGTCAATTTTTCAGAACTCGAATTTACAATGAGACCAATATTGATACAAACTTTGCAACCTCAAGAAAAACAAATTGTCCTGTTTCTGGTGGTGACACTAATTTAGCACCTCTTGATTCTCTCACTCCAACTAGGTTTGACAACAATTACTATAATGACCTTATTGCTAATAAAGGACTTTTACATTCTGATCAAGTTCTTTTCAATGGTGTTGGTTCTCAAGTTTCTTTGGTTAGAACTTATAGTAGAAATGGTATTGCTTTTAGAAGAGATTTTGCTGCTGCTATGGTGAAGATGAGTAGAATTAGTCCTCTCACTGGGACTAATGGGGAGATAAGAAAAAATTGTAGACTTGTGAATTAA 960 0.3729 MATFTKVCVTFSILVSLFACSINAQLSPNFYGRTCPSLQSIVRTQMIKAINNEARIGASILRLFFHDCFVNGCDGSILLDDTATFTGEKNAGPNKNSARGFEVIDTIKTSVEASCNATVSCADILALATRDGIALLGGPSWIVPLGRRDARTASQSAANTNIPSPSSDLATLTKMFQNKGLTLNDLTVLSGAHTIGQTECQFFRTRIYNETNIDTNFATSRKTNCPVSGGDTNLAPLDSLTPTRFDNNYYNDLIANKGLLHSDQVLFNGVGSQVSLVRTYSRNGIAFRRDFAAAMVKMSRISPLTGTNGEIRKNCRLVN 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03404 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Trre12g03404 319 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Trre12g03404 319 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 Pfam Peroxidase 42 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre12g03404 319 ProSiteProfiles Plant heme peroxidase family profile. 25 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 Gene3D - 29 316 - -
Trre12g03404 319 CDD secretory_peroxidase 25 318 IPR033905 GO:0004601|GO:0042744
Trre12g03404 319 FunFam Peroxidase 163 298 - -
Trre12g03404 319 Gene3D Peroxidase, domain 2 163 298 - -
Trre12g03404 319 SUPERFAMILY Heme-dependent peroxidases 25 319 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre12g03404 319 FunFam Peroxidase 29 174 - -
Trre12g03404 319 PANTHER PEROXIDASE 72-RELATED 19 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03404 Trre-Chr12 49602016 49604495 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03404 22 319 Peroxidase AT5G05340 63.333 3.00e-136 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03404 K00430 - gmx:100810392 496.893