Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03403 ATGATCAAAGCTATCAATAATGAAGCTAGAATTGGTGCTTCTATACTTCGCTTGTTCTTCCATGATTGCTTTGTCAATGGATGTGATGGATCTGTACTATTAGATGACATTGGCACATTTGTTGGTGAAAAAAATGCTGGGCCTAACAAAAATTCAGCTAGAGGTTTTGAAGTGATTGATACCATTAAAACCAAAGTTGAAGCTGCTTGCAAATCCAAAGTGTCATGTGCAGATATTCTTGCACTTGCAACTAGAGATGGAATAGTCTTGCTTGGAGGACCCTCATGGACAGTACCACTTGGAAGAAGAGATGCAAGAACAGCAAGCCAAAGTGCAGCCAACACCCAAATCCCATCACCATCATCTGACCTTAAAACCCTCACCAAAATGTTTAAAGACAAAGGTCTAACATTAAAAGACCTTACTGTCCTTTCTGGTGCACACACCATAGGTCAAACAGAATGTCAATTTTTCAGAACTCGCATATACAATGAAACCAACATTGACAGAAACTTTGCCACCTTAAGAAAAAGAAACTGCCCTACCTCTGGTGGTGACACCAACTTGGCACCTCTTGATTCTGTCACTCCAACTAAGTTTGATAACAATTACTATAATGACCTTATTGCTAAAAAAGGACTTCTTCATTCTGATCAAGTTCTTTTCAATGGTGTTGGTTCTCAAGTTTCTTTGGTTAAGACTTATAGTACTAATGGTAATGCTTTTGCTAGAGATTTTGCTGCTGCTATGGTGAAATTGAGTAAAATTAGTCCTCTAACTGGAACTAAAGGAGAGATTAGAAAGAATTGCAGATTTGTTAATTGA 825 0.3794 MIKAINNEARIGASILRLFFHDCFVNGCDGSVLLDDIGTFVGEKNAGPNKNSARGFEVIDTIKTKVEAACKSKVSCADILALATRDGIVLLGGPSWTVPLGRRDARTASQSAANTQIPSPSSDLKTLTKMFKDKGLTLKDLTVLSGAHTIGQTECQFFRTRIYNETNIDRNFATLRKRNCPTSGGDTNLAPLDSVTPTKFDNNYYNDLIAKKGLLHSDQVLFNGVGSQVSLVKTYSTNGNAFARDFAAAMVKLSKISPLTGTKGEIRKNCRFVN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03403 274 Gene3D - 3 271 - -
Trre12g03403 274 ProSiteProfiles Plant heme peroxidase family profile. 1 274 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 SUPERFAMILY Heme-dependent peroxidases 3 274 IPR010255 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 Pfam Peroxidase 3 236 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 ProSitePatterns Peroxidases proximal heme-ligand signature. 140 150 IPR019793 -
Trre12g03403 274 ProSitePatterns Peroxidases active site signature. 12 23 IPR019794 GO:0004601
Trre12g03403 274 CDD secretory_peroxidase 3 273 IPR033905 GO:0004601|GO:0042744
Trre12g03403 274 Gene3D Peroxidase, domain 2 118 253 - -
Trre12g03403 274 FunFam Peroxidase 118 253 - -
Trre12g03403 274 PRINTS Haem peroxidase superfamily signature 74 91 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Haem peroxidase superfamily signature 193 208 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Haem peroxidase superfamily signature 12 26 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Haem peroxidase superfamily signature 92 104 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Haem peroxidase superfamily signature 140 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PANTHER PEROXIDASE 72-RELATED 3 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 54 67 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 207 224 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 248 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 14 34 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 139 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 73 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 191 206 IPR000823 GO:0004601|GO:0006979|GO:0020037
Trre12g03403 274 PRINTS Plant peroxidase signature 92 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03403 Trre-Chr12 49588822 49591604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03403 3 270 Peroxidase AT5G05340 63.704 1.15e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03403 K00430 - gmx:100803503 440.269