Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03400 ATGGCCGCCATGCCGTTGGGGCCGCACCACCATCAACCACCGCAACAAGCACCGTTACCGTTGCCGTTACCTTTACCACCGCCGCAGTTACAACAACAACAACAAACACTGAATGAGCCGATGAAAACAACGGCGGCTAGTGGCGTCACCGATATGAACACCGATAAGGAAATGTCGGCTACTGTCGTTGACAGTAATGATGCAGTCACCGGTCACATAATCTCAACTACAATCGGAGGCAAAAATGGTGACCCGAAACGGACAATCAGTTACATGGCTGAACGTGTTGTTGGGACGGGATCATTTGGGATTGTTTTTCAGGCAAAGTGCTTGGAGACTGGTGAGGCGGTGGCTATAAAGAAGGTTTTGCAAGACAAGCGGTACAAAAATCGTGAACTGCAGTTAATGCGTGTATTGGATCACCCAAATGTAATTTCCTTGAAGCACTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTTAACTTGGTCATGGAATATGTCCCTGAGACGATGTACCGAGTTCTAAAGCACTACAACAATATCAACCAAAGAATGCCCCTAATCTATGTGAAATTATATACATACCAAATATTCAGAGGACTAGCATATATCCATACTGTTCCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTATTGGTTGATCCTCTCACTCACCAAGTTAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTCAAGGGTGAAGCAAACATTTCATACATATGTTCACGGTACTATCGGGCCCCAGAACTAATATTCGGTGCGACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCACTATTCCCAGGAGAGAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGTATGAACCCTAATTATTCTGATTTTAGATTCCCCCAGATTAAAGCTCATCCTTGGCACAAGGTTTTTCACAAGCGCATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTTCAATATTCACCAAGTCTTCGTTGCAGTGCACTGGAAGCATGTGCACATCCCTTCTTTGATGAACTTCGAGAGCCCAATGCTCGGCTTCCTAATGGTCGTCCTCTGCCTCCTCTTTTCAACTTTAAACAGGAATTATCTGGAGCATCCCCTGAACTGATCAATAAACTGATCCCAGAGCATGTCAGGCGGCAAACTGGTCTCGGCTTTTCCCATATCCCGGCTAGCACATAA 1299 0.4503 MAAMPLGPHHHQPPQQAPLPLPLPLPPPQLQQQQQTLNEPMKTTAASGVTDMNTDKEMSATVVDSNDAVTGHIISTTIGGKNGDPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDKRYKNRELQLMRVLDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYNNINQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYSDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCSALEACAHPFFDELREPNARLPNGRPLPPLFNFKQELSGASPELINKLIPEHVRRQTGLGFSHIPAST 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03400 432 CDD STKc_GSK3 86 378 IPR039192 -
Trre12g03400 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Trre12g03400 432 SUPERFAMILY Protein kinase-like (PK-like) 90 400 IPR011009 -
Trre12g03400 432 ProSitePatterns Protein kinases ATP-binding region signature. 97 121 IPR017441 GO:0005524
Trre12g03400 432 SMART serkin_6 91 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03400 432 Gene3D Phosphorylase Kinase; domain 1 76 170 - -
Trre12g03400 432 FunFam Shaggy-related protein kinase kappa 171 418 - -
Trre12g03400 432 MobiDBLite consensus disorder prediction 1 46 - -
Trre12g03400 432 FunFam Glycogen synthase kinase-3 beta 75 170 - -
Trre12g03400 432 Gene3D Transferase(Phosphotransferase) domain 1 171 418 - -
Trre12g03400 432 Pfam Protein kinase domain 91 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03400 432 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 55 420 - -
Trre12g03400 432 MobiDBLite consensus disorder prediction 11 29 - -
Trre12g03400 432 ProSiteProfiles Protein kinase domain profile. 91 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03400 432 MobiDBLite consensus disorder prediction 30 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03400 Trre-Chr12 49490669 49495004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03400 95 413 MAP Kinase Gene Family AT3G59790 35.629 3.33e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trre12g03400 Pkinase 1.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03400 K14502 - qsu:111995841 745.347