Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03393 ATGAGACTCATATCCGATGAACTATACGAATCACTGCAAAAAACTTGTAATGGAGACTATGTGAATGTAGAGACCAGAAATGTTTTATGTTCCAGAGATATGAGTTCATTCAGCGAGGGAAGTATCGGGAAATGGCATCGTTGTACCTATAATATACCGAATAAGGCGGATATCCATAATACCTATGATTATCACGTAAACCTCGGTAGAAAAGGGATTCGTTCGCTAATTTACAGTGGAGATCATGACTTGTCGGTTCCATTCTTGTCAACACAAGCTTGGATAAGATCTTTGAACTATTCCATTGTTGATGATTGGAGGTAA 324 0.3827 MRLISDELYESLQKTCNGDYVNVETRNVLCSRDMSSFSEGSIGKWHRCTYNIPNKADIHNTYDYHVNLGRKGIRSLIYSGDHDLSVPFLSTQAWIRSLNYSIVDDWR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03393 107 Gene3D alpha/beta hydrolase 4 107 IPR029058 -
Trre12g03393 107 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 43 103 IPR001563 GO:0004185|GO:0006508
Trre12g03393 107 SUPERFAMILY alpha/beta-Hydrolases 1 106 IPR029058 -
Trre12g03393 107 Pfam Serine carboxypeptidase 41 107 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03393 Trre-Chr12 49416413 49417000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03393 32 107 Calmodulin-binding Proteins AT2G22960 59.211 3.74e-26 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03393 K16296 - gmx:100801015 148.288