Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03391 ATGTACAAACGTAGATTCAACACCAAACCGGTGTATGTTGCTGACCCAGATGAGCACGAGCTAGAGTCCAAGCCCGAGCTCATCTCAGAAGCTGGGCCAGCTTCTCCTTCTTCATGTGAAGACACAAAAATTGAAGAACCATCACCCAAGAAAAGGAGGGAGATGAAGAAAAGAGTAGTTACTATACCGATCGGTGACGTGGAAGGATCTAAGAGTAAAGGAGAGACATTTCCACCGTCGGATTCATGGGCTTGGAGAAAGTACGGTCAAAAGCCCATTAAAGGCTCCCCTTATCCAAGGGGATATTACCGATGTAGTAGTTCAAAAGGATGTCCCGCTAGAAAACAAGTTGAACGAAGCCGTGTGGACCCCACAAACCTCCTCGTAACCTACGCCTATGATCACAACCACTCCCTTCCTCTCCCCAAATCTCATTCCTCTTCCGCCGCCGTAACCGCCACCGTAACTACCACCGTCGACTCTCCCGACGATGACTCTTCTGGCGAATGCACCGCCGCTACTCCTCCTCAGCCAGAGAATCCAACAGTTTTCTCCGTTCATCCTGACTTCGACTTCGCCGGCGAACATCACGCCGTGTTTGGATGGTTCGACGACGTAGCTTCCACCGGAGTTCTTGTAAGTCCGATCTGCGGAGGAGTAGAAGATGTGACGCTGACGATTAGGGAAGAAGATGAATCGCTTTTCGCTGATCTCGGAGAGTTACCGGAATGCTCAACGGTTTTCCGGCAGAGGAATATTCAGAGTACGATTCAGTGTAGCGGCATCACAGGATAA 795 0.5019 MYKRRFNTKPVYVADPDEHELESKPELISEAGPASPSSCEDTKIEEPSPKKRREMKKRVVTIPIGDVEGSKSKGETFPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTNLLVTYAYDHNHSLPLPKSHSSSAAVTATVTTTVDSPDDDSSGECTAATPPQPENPTVFSVHPDFDFAGEHHAVFGWFDDVASTGVLVSPICGGVEDVTLTIREEDESLFADLGELPECSTVFRQRNIQSTIQCSGITG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03391 264 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 246 IPR044810 GO:0003700
Trre12g03391 264 ProSiteProfiles WRKY domain profile. 80 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03391 264 SMART WRKY_cls 79 139 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03391 264 MobiDBLite consensus disorder prediction 1 84 - -
Trre12g03391 264 FunFam WRKY transcription factor 65 66 140 - -
Trre12g03391 264 MobiDBLite consensus disorder prediction 157 180 - -
Trre12g03391 264 MobiDBLite consensus disorder prediction 43 61 - -
Trre12g03391 264 SUPERFAMILY WRKY DNA-binding domain 75 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre12g03391 264 MobiDBLite consensus disorder prediction 157 182 - -
Trre12g03391 264 MobiDBLite consensus disorder prediction 10 26 - -
Trre12g03391 264 Pfam WRKY DNA -binding domain 81 137 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre12g03391 264 Gene3D WRKY domain 67 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03391 Trre-Chr12 49404882 49407957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03391 13 258 WRKY Transcription Factor Family AT3G58710 50.584 3.54e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre12g03391 WRKY 5.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03391 - - cam:101504205 411.764