Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03389 ATGTTGCTCTCATGGAGGTCTTTGCTCCTGCAACCATTTAAGGCTATGTTGGGTCGTTTTTCGTTTTCCAATTTGGGCCGGGGAAGTATAACTTCTCACAGTTCTTCATTTGATTCCAATAGTGTCCATAGCTATAGATACGATGTGTTTATCAGTTTCAGAGGTGTTGACACCCGCAACACTTTTGTTGATCATCTTTATGCCCATCTAACAAGAAAGGGTATTTTCGCGTTCAAGGATGATAAAAGGCTTGAGAAAGGGGAATCCCTATCACCACAACTTCTACAAGCAATTAGAAACTCTCGGATTTCTATAGTTGTTTTCTCTCAACGATATGCTGAGTCAACATGGTGTTTGGAAGAAATGGCTACTATTGCCGAATGTCGTAGGGATTTGAAACAAACTGTTTTCCTTGTCTTTTATGATATCGATCCATCTCATGTACGAAAACAGACTGGGTTGTACCAGCATGCCTTTGATTTACACAGGAATAGATTCAATCATGATCCGAATAAGGTTGTGAGATGGACGAAAGCTATGGTCGATTTAACTGAAATAGTTGGCTGGGATGTTAGGAACAAGCCAGAGTTTCGAGAGATTAAAAATATTGTTCAGGAAGTAATAAAAATATTGGGTCATAAATTCTCAGGGTTTGCTGATGACATTATTGGGATACAACCTCGAGTAGAAGAGTTAGAAAGCCTTCTGAAATTAAACTCAAAGGATGATGAATTCCGAGCTATAGGTATATGGGGGATGGCTGGAATTGGAAAGACAACTCTTGCTTCCGTCTTGTATGATAGAGTCTCCTATCAGTTTGATGCAAGCTGTTTTATTGAGAATGTAAGCAAAATTTATAAAGAAGGCGGTGCTACTGCTGTAAAGAAACAAATCCTTCGGCAAACCATAGATGAAAAAAACTTAGAGACATACAGCCCTTCTGAAATATCTGGAATTGTACATAAAAGACTTTGCAACAGAAAGTTTCTTGTAGTTCTTGACAATGTTGATCTATTAGAGCAGGTGGAAGAGTTGGCTATAAATTCTGAGTTGCTTGGTAAAGGGAGTAGAATGATCATCACAACCAGGGATATGCATATTCTAAGAGTGTTTGGAGCACAGTTATCGGTATCTCACAGTTATCTCACCATATATGAGGTTCCACTATTGAATAGCAATGATGCTCGCGAACTTTTCTATACAAAAGCCTTCAAAAATGAGGATCCCACTAGCGGATGTGTGAAGCTAATTCCCGAGGTGCTAAAATATGCTCAAGGTCTTCCATTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAATGCTAACCAATGGAGAGATGCTTTGTATAGATTGAGGAATAATCCAGACAACAAAGTTATGGATGTGCTTCAGATAAGTTTTGAGGGATTGCATTCTGAGGAAAAAGAAATATTTCTGCATATTGCTTGTTTCTTTAAAGGGGAGAAGGAAGATTATGTGAAGAGAATTCTAGATGCTTGTGGGTTGCATCCTCACATTGGAATTCCAAGTTTGATAGAGAGGTCACTCATAACTATTATAAATCAGGAAATTCTTATGCATGAAATGTTGCAAGAATTGGGGAAGAAAATTGTTCGGCAACAATTTCCTTTCCAACCAGGATCGTGGAGTAGATTGTGGCTTTATAAGGATTTCTACTCTGTCATGACTACAGAAACGGGAACAAACAATGTTAATGCCATAATTCTAGACCAAAAAGTCAATATCTCTGAACATCCTCGGTTGAATGCTGAAGGGTTGTCAATAATGAGGGGACTTAAAATTCTTATATTATATCATACAAATTTTTCAGGAAGTCTCAACTTCCTTTCTAACAGCTTGCAGTATCTTCTGTGGTATGGTTACCCGTTTGCTTCTTTGCCATTCAATTTTGAGCCTTATTGTCTTGTTGAATTGAATATGCCTTGTAGCAGCATCCAACGACTATGGGACGGTCACAAGGATCTCCCTTGTTTAAAAAGGGTGGATTTAAGCAACTCCAAATATCTTGTGGAAACTCCTAGTTTTGCTGGAAGCAGAATACTTGAGCGGCTAGATTTTACAGGATGTATAAACCTATCGTATGTCCATCCGTCTATTGGTCTTCTGGAAAAACTTGCTTTCTTGAGTTTGGAAGGCTGCAGCAGTTTAGTCAGGCTAGTTCTTGATGGCGACAATGCATCTAACTTATATTCTCTCAAAGTTTTACATCTCTCTGGCTGCACACAACTTGAAACCATATCTGGTTTTAGCGGGGTCTCAAATCTTGAGTATCTCGATATTGATCAATGTGCGAGTTTATCAACGATTGATCATTCTATTGGGGATCTTAAACAACTTAAATTCTTGAGTTTAAGAGACTGCACGAATCTTGTCAGTATACCGGAAAGCATTAATTCTATGCCTTCTCTTGTGACTATAGATTTATGTGGCTGCTTAAAACTAGAGAATATACCCTTGCTGGCAAACATGTCATTGTCTGAAGAAAGTACAGACGCCATATTTGCGTCTGCAGAAAATTTTGATCTCTCTTATGGTGAACTCATATCTTCTTACTATCTGAATTCTTTGATATTTTTGGACCTTAGCTTTTGCAATTTAAGTGCAGTCCCTGATGCTATCGGTGAGTTAAGGCATTTAGAAAGGTTAAATCTTGAAGGAAACAACTTCGTTTGTTTACCGCCTTTAATGATGAGGCTTTCTAGTCTAGCATATTTAAACTTGGCGCATTGCAGCAGGCTTCAATATTTGCCTGACCTCCAATTGTGTGCTACTTCTTCATCTGGGGGCAAGTATTTCAAAATGATATCCGGATCTCATAATCACAGGTCAGGATTATATATTTTCAACTGTCCCCTCTTGGAGATCTCAGAAAGTCATAACTTGGCACTTTCGTGGATGATGAAATTAATTGAGAATCCTTGTCATTTCCGGTGTGGCCTTGACATTGTTGTTCCTGGATTCACAGTTCCACGGTGGTTTTATCATCAATTTGCAGAAAATACAAGGCTACAGATAACAGATTATATGACTGAGTTTGACAATTGGCTTGGCTTTGCCTTTTGTGTGGCATTTGTGGAAAACTGTCGTCCTACAACTTCTAGTTCTTCACATTATTCATTTTCATCACAGCTGCCATATCCTCTTTATCTTTCTTTTGAAAGTGAACAAATGGAAGAAACCTTCGATATGCCGCTTCGGTTAGACCTGAACAAGGCTGATGGTTCAAATACAGATCATCTCTGGCTAATCTATATCTCTAGGCTCCACTGCCATTTTGTGACAACAGGAGCAACAGTCACATTTAAAGCTCACCCAGATGTGCAGTTGAAAACTTGGGGATTTCGCATGGTATTCGAACATGATATTTCTAGTTCATTCGACTTAGAGACAGATGAGGTTCATCAACACGGCTATATTCACTTGAATCATGTACATGAACATAGCCGCAGTAAGAGGCCTGAAGTCAAGCTTCCTTTTAATTGGTATGCTACTGAGGAAGAGGAAAAGTCTAAAATTCTGCTTCGTTATAATTGGCATGTTACTGAGGAAGAGGAAATCGAGAGCAGTGAAGTGAATGTGAAAGAAAGCCATCTCTCGAATATGGGCCTTATCACATAG 3645 0.3885 MLLSWRSLLLQPFKAMLGRFSFSNLGRGSITSHSSSFDSNSVHSYRYDVFISFRGVDTRNTFVDHLYAHLTRKGIFAFKDDKRLEKGESLSPQLLQAIRNSRISIVVFSQRYAESTWCLEEMATIAECRRDLKQTVFLVFYDIDPSHVRKQTGLYQHAFDLHRNRFNHDPNKVVRWTKAMVDLTEIVGWDVRNKPEFREIKNIVQEVIKILGHKFSGFADDIIGIQPRVEELESLLKLNSKDDEFRAIGIWGMAGIGKTTLASVLYDRVSYQFDASCFIENVSKIYKEGGATAVKKQILRQTIDEKNLETYSPSEISGIVHKRLCNRKFLVVLDNVDLLEQVEELAINSELLGKGSRMIITTRDMHILRVFGAQLSVSHSYLTIYEVPLLNSNDARELFYTKAFKNEDPTSGCVKLIPEVLKYAQGLPLAVRVVGSFLCTRNANQWRDALYRLRNNPDNKVMDVLQISFEGLHSEEKEIFLHIACFFKGEKEDYVKRILDACGLHPHIGIPSLIERSLITIINQEILMHEMLQELGKKIVRQQFPFQPGSWSRLWLYKDFYSVMTTETGTNNVNAIILDQKVNISEHPRLNAEGLSIMRGLKILILYHTNFSGSLNFLSNSLQYLLWYGYPFASLPFNFEPYCLVELNMPCSSIQRLWDGHKDLPCLKRVDLSNSKYLVETPSFAGSRILERLDFTGCINLSYVHPSIGLLEKLAFLSLEGCSSLVRLVLDGDNASNLYSLKVLHLSGCTQLETISGFSGVSNLEYLDIDQCASLSTIDHSIGDLKQLKFLSLRDCTNLVSIPESINSMPSLVTIDLCGCLKLENIPLLANMSLSEESTDAIFASAENFDLSYGELISSYYLNSLIFLDLSFCNLSAVPDAIGELRHLERLNLEGNNFVCLPPLMMRLSSLAYLNLAHCSRLQYLPDLQLCATSSSGGKYFKMISGSHNHRSGLYIFNCPLLEISESHNLALSWMMKLIENPCHFRCGLDIVVPGFTVPRWFYHQFAENTRLQITDYMTEFDNWLGFAFCVAFVENCRPTTSSSSHYSFSSQLPYPLYLSFESEQMEETFDMPLRLDLNKADGSNTDHLWLIYISRLHCHFVTTGATVTFKAHPDVQLKTWGFRMVFEHDISSSFDLETDEVHQHGYIHLNHVHEHSRSKRPEVKLPFNWYATEEEEKSKILLRYNWHVTEEEEIESSEVNVKESHLSNMGLIT 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03389 1214 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 728 IPR044974 GO:0006952
Trre12g03389 1214 FunFam Disease resistance protein (TIR-NBS-LRR class) 43 213 - -
Trre12g03389 1214 PRINTS Disease resistance protein signature 247 262 - -
Trre12g03389 1214 PRINTS Disease resistance protein signature 424 438 - -
Trre12g03389 1214 PRINTS Disease resistance protein signature 736 752 - -
Trre12g03389 1214 PRINTS Disease resistance protein signature 323 337 - -
Trre12g03389 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 483 IPR027417 -
Trre12g03389 1214 Gene3D Ribonuclease Inhibitor 734 841 IPR032675 -
Trre12g03389 1214 Gene3D Ribonuclease Inhibitor 845 971 IPR032675 -
Trre12g03389 1214 SMART till_3 46 186 IPR000157 GO:0007165
Trre12g03389 1214 Gene3D Ribonuclease Inhibitor 553 733 IPR032675 -
Trre12g03389 1214 SUPERFAMILY "Winged helix" DNA-binding domain 459 563 IPR036390 -
Trre12g03389 1214 Gene3D - 389 473 IPR042197 -
Trre12g03389 1214 SUPERFAMILY Toll/Interleukin receptor TIR domain 36 189 IPR035897 -
Trre12g03389 1214 ProSiteProfiles TIR domain profile. 45 211 IPR000157 GO:0007165
Trre12g03389 1214 Pfam NB-ARC domain 237 462 IPR002182 GO:0043531
Trre12g03389 1214 SUPERFAMILY L domain-like 595 982 - -
Trre12g03389 1214 Gene3D - 218 376 IPR027417 -
Trre12g03389 1214 Pfam TIR domain 47 209 IPR000157 GO:0007165
Trre12g03389 1214 Gene3D - 43 216 IPR035897 -
Trre12g03389 1214 Pfam Leucine Rich Repeat 643 660 IPR011713 -
Trre12g03389 1214 Pfam C-JID domain 994 1131 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03389 Trre-Chr12 49381430 49385588 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03389 223 826 WRKY Transcription Factor Family AT5G45050 32.602 4.07e-84 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03389 - - psat:127091204 1843.55