Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03385 ATGGATGTGCTTCAGGAATTGGGGAAACAAATTGTTCGACAACAGTTTCCAGACGAACCAGGATCGTGGAGTAGATTGTGGCTTTATGAGGATTTCTACACTGTCATGACGACAGAAACGGGTACAAACAAGGTTAAAGCCATAATTCTAGATCAAAAACAGCATATCTCTGAATATCCTCCATTATTGGCTGATGGATTTATCTTCTGTGGGATGGTTACCCTCCCTTTTGCTTCTTTGCCATTAAATTTTGAGCCGTTACGTCTTGTTGAATTGAATATGCCTTGTAGCCTCATCCAACGGCTATGGGACGGTCATAAGGATCTCCCTTGTTTGAAAAGGGTAGATTTGAGCAACTCCAAATGTCTTGTGGAGACTCCAAATTTTGCAGGAAGTCGGAGACTTGAGAGGCTAGATCTTACAGGATGCATAAACCTATCTTATAATCAAAGCACTGATCCAACTCTTGCCAAAGGGCCATCAATTCATTATAAATCCTGGTACCAGAATCCTTATCATTTCCGGTGTGGCCTTGACATTGTTGTTCCTGGGCACAGAGTTCCAAGGTGGTTTTATCATCAATTTGCGGAAAATTCAAGAATAAGAATAACAGACTGTATCACTGAGTTTGACAATTGGCTCGGCTTTGCCTTTTGTGTGGCATTTGTGGAAAACTGTCATCCTACAACTTCTAGTTCTTCACATTATTCATCACAGCTGCCATATACTCTTTACCTTTCTTTTGAAAATGAACAAATGGAAGAAACCTTCGATATGCCGCTTCGGTTAGACCTCAACAAGGCTGATGGTTCAAATACAAAACATCTCTGGCTAATCTATATCTCTAGGCCCCACTGCCATTTTGTAACAACAGGATCACAAATCACATTTAAAGCTCACGCAGGTTTGGTCATAAAGCAATGGGGATTGCGCATGGTTATGAAGCATGAAATTGATGACTATAGTCCATTTGATAAGGGGACAAATGGAGTTCATAAACAATACTATAGTTACAAATGGACTGCACTTGAATGCAGCAGCAGCAGGCCTGAAATCCAGCTTCCTTATAATTGGTATGAAGCTAAGGAAGAGATAAAGCCGAAAGTCCAGCTTCGTTATAATTGGCATGTTACCGAGGGAGAGGAAAATGAGAATAGGGAAGTGAATGTGAAACAAAGTCATCTCTTGCATACGGGCCTTACCACATAG 1209 0.4094 MDVLQELGKQIVRQQFPDEPGSWSRLWLYEDFYTVMTTETGTNKVKAIILDQKQHISEYPPLLADGFIFCGMVTLPFASLPLNFEPLRLVELNMPCSLIQRLWDGHKDLPCLKRVDLSNSKCLVETPNFAGSRRLERLDLTGCINLSYNQSTDPTLAKGPSIHYKSWYQNPYHFRCGLDIVVPGHRVPRWFYHQFAENSRIRITDCITEFDNWLGFAFCVAFVENCHPTTSSSSHYSSQLPYTLYLSFENEQMEETFDMPLRLDLNKADGSNTKHLWLIYISRPHCHFVTTGSQITFKAHAGLVIKQWGLRMVMKHEIDDYSPFDKGTNGVHKQYYSYKWTALECSSSRPEIQLPYNWYEAKEEIKPKVQLRYNWHVTEGEENENREVNVKQSHLLHTGLTT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03385 402 SUPERFAMILY L domain-like 68 148 - -
Trre12g03385 402 Gene3D Ribonuclease Inhibitor 54 164 IPR032675 -
Trre12g03385 402 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 193 IPR044974 GO:0006952
Trre12g03385 402 Pfam Leucine Rich Repeat 89 105 IPR011713 -
Trre12g03385 402 Pfam C-JID domain 182 318 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03385 Trre-Chr12 49364995 49368929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03385 1 143 WRKY Transcription Factor Family AT4G12020 29.730 6.67e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03385 - - psat:127091204 288.115