Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03384 ATGGATTCAAACACAAATATTTCAGATGCTTTACTCTCATTGAGATCCTTTTTCCTGCAACCGTTTCGTGCCCTCTTGAGTCGTTTGTCGTTTTCCAATTTGAGGCAAGGAGTTGAAGCTTCCAATTCCTCCATGGACTATAATAACTATCAAAGCTATAAATACGATGTGTTCATCAGTTTTAGAGGTCCTGACACTCGCAACACTTTTGTTGATCATCTTTATGCTCATCTAACAAGAAAGGGTATTTTTGCCTTCAAGGATGATAAAAGGCTTGAGAAAGGAGAATCCCTTTCGCCTCAACTTCTACAAGCAATTAAGAATTCACGGGTTTCTATTATTGTCTTCTCTGAAAGATATGCTGAGTCAACGTGGTGTTTGGAAGAAATGGCTACTATTGCTCAATGTCGTAAAGATTTGAAACAGACTGTTTTCCCTGTTTTTTATGATATCGATCCATCTCATGTACGAAAACAGACTGGGGTGTACCAGAATGCCTTTCTTTTACACATGAATAAATTCAAACATGATCATAATAAAGTTTTGAGATGGTCGAGAGCTATGGTCGATTTAACTGAAGTAGTTGGTTGGGATGTTAGGTACAAGCCAGAGTTTCGAGAGATTAAAAATATTGTTCAGGAGGTTATAAAATTATTGGGTCATAAGTTCTCAGGGTTTGCTGAGGACCTTATTGGGATACAACCACGAGTAGAAGAATTAGAAAGTCTTCTGAAATTAAACTCAAAGGATGATGAATTTCGAGCTATTGGTATTTGGGGGATGGCTGGAATTGGAAAGACAACTCTTGCTTCCGTCTTGTATGATAGAGTCTCCTATCAGTTTAATGCAAGCTGTTTTATTGAGAATGTAAGCAAAATTTATAATGACGGTGGTGCTACTGCTGTAAAGAAACAAATCCTTCGGCAAACCATAGATGAGAAAAACCTAGAGACATACAGCCCTTCTGAAATTTCTGGAATCGTACATAAAAGACTCCGCAACAGAAAGTTTCTTGTAGTTCTTGACAATGTTGATCTATTAGAGCAGGTGGAAGAGTTGGCTATAAATCCTGAGTTGCTTGGTAAAGGAAGTAGAATGATCATTACAACCAGGGATATGCATATTCTAAGAGTGTTTGGAGCACAGTTATCAATATCGCACGATAAATGTTTGTCATATGATGTGTATGAGGTTCCACTATTGAATAACAATGATGCTCGTGCACTTTTTTATAGAAAAGCTTTCAAAGGTGAGGATCCCTCAAGCAGATGTGTGAAGCTGACTCCTGAGGTACTAAAATATGCACAAGGTCTTCCATTAGCAGTTCGAGTAGTGGGTTCTTTCTTGTGTACTCGAAATGCTAACCAATGGAGGGATGCGTTGTATAGATTGAGGAATAATCCAGACAACAAAGTTATGGATGTGCTTCAGGTAAGTTTTGAGGGATTGCATTCAGAGGAAAAAGAAATATTTCTGCATATTGCTTGTTTCTTTAAAGAGGAGAAGGAAGATTATGTGAAGCGAATTCTAGATGCTTGTGGGTTGCACCCTCACATTGGAATTCCTAGTTTGATTGAGAGGTCACTCATAACTATTATAAATCAGGAAATTCTTATGCATGAAATGTTGCAAGAATTGGGGAAGAAAATTGTTCGGCAACAATTCCCTTTCCAACCTGGATCGTGGAGTAGATTGTGGCTTTATGAGGATTTCTACTCTGTCATGATAACAGAAACGGGAACAAACAATGTTAGTGCCATAGTTCTGGACCAAAATGTGCATATCTCTGAACATCCTCGGTTGAGGGCTGAAGTATTGTCAATAATGAGGGGACTTAAAATTCTTATATTATATCATACAAATTTTTCAGGAAGTCTCAACTTCCTTTCTAACAGCTTGCAATATCTTCTGTGGTATGGTTACCCTTTTGCTTCTTTGCCATTAAACTTTGAGCCTTATTGTCTTGTTGAATTGAACATGCCTTGTAGCAGCATCCAGCGACTTTGGGACGGTCACAAGGATCTCCCTTGTTTGAAAAGGGTGGATCTGAGCAACTCCAAATATCTTGTAGAGACTCCAAATTTTGCTGGAAGCCGGAGACTTGAGCGGCTAGATTTTACAGGATGCGTAAACCTGTCGTATGTCCATCCATCCATCGGACTTCTGGAAAAACTTGCTTTCTTGAGTTTGGAAGGCTGCAGCAGTTTGGTCAGGCTAGTTCTTGATGGTGACATTACATCTAACTTATATTCTCTCAAAGTTCTACACCTCTCTGGCTGCTCAAAACTCGAAACAATACCAAATTTTACCGGGGTCTCAAATCTTGAGTATCTTGATATTGATCAATGTGCGAGTTTATCAAAAATTGATCATTCTATTGGGGATCTTAAACAACTTAAATTCTTGAGTTTAAGACACTGCACGAATCTTGTCAGTATACCCAAAATCTTAAATTCTATGCCAAATCTTGTAACTATAGATTTATGTGGCTGCTTAAAACTAGAGAATCTACCCTTGCTTGCAAACACCCCGATGTCTCAAGAAAATATTGACATCATTACAATTTCAGAAAATTTTGATATCTCTATATCTTCTTATGATATGAATTTTTTGATTTTTTTGGATCTGAGCTTCTGCAATCTAAGTACAGTCCCTGATGCTATTAGATATCTATGGCGTTTAGAAAGGCTAAATCTTGAAGGAAACAACTTTGTTTCACTACCATCTTCAATGAGTACCCTTTTCAGTCTAGCATACTTAAACTTGGCGCATTGCAGCAGGCTTCAATCTTTACCTGAGCTCGGATTCTGTGCTACTTCTACATCTGGGGGAAGGTATTTCAAAATGGTATCTGGATCTCATGATCATAGGTCAGGATTTTATATTTTCAACTGCCCCCTCTTGGAGATTGCGGAAGGTCATAACTTGGCACTTTCGTGGCTGAGGAAATTACTTAAGAGTCCTTGTCATTTCCGGTGTGGCCTTGACATTGTAGTTCCCGGTAATACGATTCCACAGTGGTTTCCTCATCAATTTACGGCAAATTCAAGAATAAGGATAACAGATTGTGTGAATGAGTTTGGCAACTGGCTTGGCTTTTCCTTTTGTGTGACATTCGTGGAATTTCATTCAACAACTTATGGTTCACATTATCCATTTTCATCACAACTTCCATATCCTCTTTATCTTTCTTTTGAAAGTGAACAAATGGAAGAAACCTTTGAAATACCAATTCGGTTAGATTTGAATGTTGTTGATGGCTCAAATGCAGAACATTTGTGGCTAATCTATATTTCTAGGCCCCACTGCCATTTTGTAACAACAGGAGCACAAATCACGTTTAAAGCTCACCCAGGTTTGGTGATAACACGATGGGGATTGCGCATGGTTATGGAGCATGATATCGATGACAATATTCCATTTGATTCGTGGACAAAGGGAGTTCATAAACAAGACTATCTTGGCCTAGATCATGTACATGAAAGCAGTAGCAGCAGCAGCAGCAGGCCTGAAATCCAACTTCCTTATAATTGGTATGAAGCTGAGGAAAAGATAAAGCCTAAAGTCCAGCTTCGTTATAATTGGCATGTTACTGAGGAAGAGGAAAACGAGAATAGAGAAGTGAATGTGAAACAAAGTCATCTCTCGGATATGGGCCTTACCACAGCCGATGATTATCATGATTTGCCTCAAAAGTCTCTTCAATGA 3708 0.3859 MDSNTNISDALLSLRSFFLQPFRALLSRLSFSNLRQGVEASNSSMDYNNYQSYKYDVFISFRGPDTRNTFVDHLYAHLTRKGIFAFKDDKRLEKGESLSPQLLQAIKNSRVSIIVFSERYAESTWCLEEMATIAQCRKDLKQTVFPVFYDIDPSHVRKQTGVYQNAFLLHMNKFKHDHNKVLRWSRAMVDLTEVVGWDVRYKPEFREIKNIVQEVIKLLGHKFSGFAEDLIGIQPRVEELESLLKLNSKDDEFRAIGIWGMAGIGKTTLASVLYDRVSYQFNASCFIENVSKIYNDGGATAVKKQILRQTIDEKNLETYSPSEISGIVHKRLRNRKFLVVLDNVDLLEQVEELAINPELLGKGSRMIITTRDMHILRVFGAQLSISHDKCLSYDVYEVPLLNNNDARALFYRKAFKGEDPSSRCVKLTPEVLKYAQGLPLAVRVVGSFLCTRNANQWRDALYRLRNNPDNKVMDVLQVSFEGLHSEEKEIFLHIACFFKEEKEDYVKRILDACGLHPHIGIPSLIERSLITIINQEILMHEMLQELGKKIVRQQFPFQPGSWSRLWLYEDFYSVMITETGTNNVSAIVLDQNVHISEHPRLRAEVLSIMRGLKILILYHTNFSGSLNFLSNSLQYLLWYGYPFASLPLNFEPYCLVELNMPCSSIQRLWDGHKDLPCLKRVDLSNSKYLVETPNFAGSRRLERLDFTGCVNLSYVHPSIGLLEKLAFLSLEGCSSLVRLVLDGDITSNLYSLKVLHLSGCSKLETIPNFTGVSNLEYLDIDQCASLSKIDHSIGDLKQLKFLSLRHCTNLVSIPKILNSMPNLVTIDLCGCLKLENLPLLANTPMSQENIDIITISENFDISISSYDMNFLIFLDLSFCNLSTVPDAIRYLWRLERLNLEGNNFVSLPSSMSTLFSLAYLNLAHCSRLQSLPELGFCATSTSGGRYFKMVSGSHDHRSGFYIFNCPLLEIAEGHNLALSWLRKLLKSPCHFRCGLDIVVPGNTIPQWFPHQFTANSRIRITDCVNEFGNWLGFSFCVTFVEFHSTTYGSHYPFSSQLPYPLYLSFESEQMEETFEIPIRLDLNVVDGSNAEHLWLIYISRPHCHFVTTGAQITFKAHPGLVITRWGLRMVMEHDIDDNIPFDSWTKGVHKQDYLGLDHVHESSSSSSSRPEIQLPYNWYEAEEKIKPKVQLRYNWHVTEEEENENREVNVKQSHLSDMGLTTADDYHDLPQKSLQ 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03384 1235 FunFam Disease resistance protein (TIR-NBS-LRR class) 51 221 - -
Trre12g03384 1235 SUPERFAMILY L domain-like 605 991 - -
Trre12g03384 1235 Gene3D - 226 384 IPR027417 -
Trre12g03384 1235 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 197 IPR035897 -
Trre12g03384 1235 SUPERFAMILY "Winged helix" DNA-binding domain 470 574 IPR036390 -
Trre12g03384 1235 Pfam C-JID domain 999 1135 IPR045344 -
Trre12g03384 1235 Pfam NB-ARC domain 245 468 IPR002182 GO:0043531
Trre12g03384 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 494 IPR027417 -
Trre12g03384 1235 Gene3D - 51 225 IPR035897 -
Trre12g03384 1235 Pfam TIR domain 54 217 IPR000157 GO:0007165
Trre12g03384 1235 PRINTS Disease resistance protein signature 435 449 - -
Trre12g03384 1235 PRINTS Disease resistance protein signature 747 763 - -
Trre12g03384 1235 PRINTS Disease resistance protein signature 255 270 - -
Trre12g03384 1235 PRINTS Disease resistance protein signature 331 345 - -
Trre12g03384 1235 ProSiteProfiles TIR domain profile. 53 219 IPR000157 GO:0007165
Trre12g03384 1235 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 55 738 IPR044974 GO:0006952
Trre12g03384 1235 Gene3D Ribonuclease Inhibitor 575 744 IPR032675 -
Trre12g03384 1235 Gene3D Ribonuclease Inhibitor 856 1010 IPR032675 -
Trre12g03384 1235 Gene3D Ribonuclease Inhibitor 745 855 IPR032675 -
Trre12g03384 1235 SMART till_3 54 194 IPR000157 GO:0007165
Trre12g03384 1235 Gene3D - 400 484 IPR042197 -
Trre12g03384 1235 Pfam Leucine Rich Repeat 654 671 IPR011713 -
Trre12g03384 1235 MobiDBLite consensus disorder prediction 1200 1235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03384 Trre-Chr12 49352577 49358214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03384 747 920 WRKY Transcription Factor Family AT4G12020 33.333 4.05e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03384 - - psat:127091204 1796.56