Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03383 ATGAGTTCCGCTTTGTATTCTTTATTAGAAGATCCAGTGGTACATAAGGCAATGGATTTTGTGGACAAAGTAAGAATGGAGTTTGCAGATGATAGGGATAAGTATGATGAGTTTCTTACAATCCTAAAAGATGCTCGGAACGTGACTGATTTAAGAGGTATAATAGCAAGAATGGAGGAACTGCTTAAAGCACATACACATTTGATTATGATATTCAGAACCTTCCTGCCAAAGAAATATCAAATCACACTTGACGATAACAATGATAAGGCTGATGAAGCAAAACAGCTTGAAAGAAAGTTATTATTATTAGACATTAGAAGTAGGTTTTAG 333 0.3453 MSSALYSLLEDPVVHKAMDFVDKVRMEFADDRDKYDEFLTILKDARNVTDLRGIIARMEELLKAHTHLIMIFRTFLPKKYQITLDDNNDKADEAKQLERKLLLLDIRSRF 110
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03383 110 ProSiteProfiles PAH domain profile. 9 79 IPR003822 GO:0006355
Trre12g03383 110 Gene3D Paired amphipathic helix 16 77 IPR036600 GO:0006355
Trre12g03383 110 Pfam Paired amphipathic helix repeat 33 76 IPR003822 GO:0006355
Trre12g03383 110 PANTHER SIN3B-RELATED 16 94 IPR039774 GO:0003714
Trre12g03383 110 SUPERFAMILY PAH2 domain 13 80 IPR036600 GO:0006355
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g03383 Trre-Chr12 49349969 49350411 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03383 17 89 WRKY Transcription Factor Family AT4G12020 39.189 1.08e-12 61.2
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre12g03383 PAH 5.2e-08 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03383 K11644 - tpra:123897850 128.257