Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03364 ATGGATACCATAGTTCAACAATATGCATTGACCTTGTTCTGTCTCTTGGTGTTGATGCAAAAGGGTTATGCCTATGAATTTATAGTTGGAGGCCAAAAGGGTTGGAGTGTTCCAAGTGACCCTAATGCCAACCCTTACAATCAATGGGCAGAAAAGAGCAGATTTCAAGTAGGAGACACCCTTGTGTTCAATTACCAATCTGGCCAAGATTCAATAATTCAAGTAAACAGCCAACAAGACTATGAAAATTGCAACACTGATGCTGCATCTTCTGCAAAAGCCTCTGATGGCCACACAGTAATCAAACTCAATAAATCAGGACCTCACTACTTCATAAGTGGAAACAAAAACAACTGTCTCAAGAATGAGAAGTTATTGGTGATTGTACTTGCTGACAGAACCAACAAAAACTCAAACACAAACCAAACAACTACTCCTCCTTCTCCTTCACCTTCTGTTTCTATTTCTCCTTCTCCTTCTCCATTATCCTCACACTCATCAGATGCATTAGCTCCTATACTACCACCTTCTCAGCTAGAGGGTTCATCTCCACCACCTGTTCAACAAGTAGGTTTAACTCCACCACCTGTTCAGCAAGTAGGTTCATCTCCACCACTAGGGACTGATGTGACAAATCCAATTACTCCAACTCAAGCTCCTGTTTCTGAACCACCTCCTCCTCCTCCTAATACTGCTTCTTCAAGCTTGGTTAGCTTTGGTTGTTCTGTTGGAGCACTCATGGTTTCAGTTCTGGTTTTTTCCAAGTGA 768 0.4193 MDTIVQQYALTLFCLLVLMQKGYAYEFIVGGQKGWSVPSDPNANPYNQWAEKSRFQVGDTLVFNYQSGQDSIIQVNSQQDYENCNTDAASSAKASDGHTVIKLNKSGPHYFISGNKNNCLKNEKLLVIVLADRTNKNSNTNQTTTPPSPSPSVSISPSPSPLSSHSSDALAPILPPSQLEGSSPPPVQQVGLTPPPVQQVGSSPPLGTDVTNPITPTQAPVSEPPPPPPNTASSSLVSFGCSVGALMVSVLVFSK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03364 255 SUPERFAMILY Cupredoxins 24 131 IPR008972 -
Trre12g03364 255 FunFam Early nodulin-like protein 1 24 134 - -
Trre12g03364 255 CDD OsENODL1_like 25 130 IPR041846 -
Trre12g03364 255 MobiDBLite consensus disorder prediction 178 192 - -
Trre12g03364 255 PANTHER BLUE COPPER PROTEIN 24 153 IPR039391 GO:0009055
Trre12g03364 255 MobiDBLite consensus disorder prediction 193 217 - -
Trre12g03364 255 MobiDBLite consensus disorder prediction 218 232 - -
Trre12g03364 255 ProSiteProfiles Phytocyanin domain profile. 25 131 IPR003245 GO:0009055
Trre12g03364 255 Pfam Plastocyanin-like domain 35 121 IPR003245 GO:0009055
Trre12g03364 255 MobiDBLite consensus disorder prediction 136 237 - -
Trre12g03364 255 MobiDBLite consensus disorder prediction 157 171 - -
Trre12g03364 255 Gene3D - 23 132 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03364 Trre-Chr12 49213104 49214818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03364 12 167 Phytocyanin Superfamily AT3G20570 49.701 9.65e-50 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03364 - - gmx:100788637 235.728