Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03359 ATGTCTGAATTAGACGCACAAATTCCTACTACCTTCGATCCTTTTGCTGAGGCAAATGCTGAGGACTCTGGTGCTGGATCATCAAAGGAGTACGTCCATATTCGTATACAGCAGCGAAATGGTAGGAAAAGCTTGACAACTGTCCAGGGATTGAAGAAAGAATTCAGTTACAACAAGATTCTTAAAGACCTTAAGAAGGAGTTTTGTTGTAATGGTACAGTTGTCCAGGACCCAGAGCAAGGACAGGTTATTCAACTTCAAGGCGATCAGAGGAAGAATGTATCTACCTTCCTAGTCCAGGCTGGAATCGTGAAGAAGGAGCATATTAAAATTCATGGTTTCTGA 345 0.4203 MSELDAQIPTTFDPFAEANAEDSGAGSSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPEQGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKIHGF 114
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03359 114 NCBIfam translation initiation factor SUI1 6 114 IPR005874 GO:0003743
Trre12g03359 114 CDD eIF1_SUI1 30 113 IPR005874 GO:0003743
Trre12g03359 114 FunFam Eukaryotic translation initiation factor SUI1 2 114 - -
Trre12g03359 114 PIRSF Transl_init_SUI1_Euk 1 114 IPR005874 GO:0003743
Trre12g03359 114 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 8 114 - -
Trre12g03359 114 MobiDBLite consensus disorder prediction 1 29 - -
Trre12g03359 114 ProSiteProfiles Translation initiation factor SUI1 family profile. 32 102 IPR001950 GO:0003743|GO:0006413
Trre12g03359 114 Pfam Translation initiation factor SUI1 29 103 IPR001950 GO:0003743|GO:0006413
Trre12g03359 114 SUPERFAMILY eIF1-like 4 114 IPR036877 GO:0003743|GO:0006413
Trre12g03359 114 Gene3D - 1 114 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre12g03359 Trre-Chr12 49179294 49181122 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03359 1 114 Eukaryotic Initiation Factors Gene Family AT4G27130 87.719 1.34e-72 209
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03359 K03113 - csin:114321350 224.557