Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03342 ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACACTTTGATTGATGAAATTCCCGTCTCCGTTGATGGTTCCTTCGCCTTCACGTGGCCCCCACCACATCCTTCCAATGTTGGTGTTGAAATGGATGGTGGCTCTTTGGGGGATTCTGATGGTATCAAAGATCCTGGCTCGAAGAAGAGGGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGCTGCGAAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCTTCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCAGCAATTCTGATTGATGCTGCCCGCATGGTGACACAGTTGCGGGGTGAAGCCGAGAAGTTGAAAAACTCAAATTCAAATCTTCAAGAGAAGATTAAAGAGTTGAAGGTTGAGAAAATTGAACTCCGCGATGAGAAGCAGAGGCTTAAGGCTGAGAAAGAGAAATTGGAGCAGCAAATGAAATCAATGAATGCCCAACCCAGTTTCTTGTCGCACCCTCCTGCAATCCCCGCTGCATTTGCTCCACAAGGCCAAGTCCCTGGAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCTCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTCGCCTAA 693 0.4848 MVSPENTNWLFDYTLIDEIPVSVDGSFAFTWPPPHPSNVGVEMDGGSLGDSDGIKDPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSFLEPGRPPKTDKAAILIDAARMVTQLRGEAEKLKNSNSNLQEKIKELKVEKIELRDEKQRLKAEKEKLEQQMKSMNAQPSFLSHPPAIPAAFAPQGQVPGNKLMPFMSYPGVAMWQFMPPASVDTSQDHVLRPPVA 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03342 230 MobiDBLite consensus disorder prediction 38 77 - -
Trre12g03342 230 Pfam Helix-loop-helix DNA-binding domain 73 120 IPR011598 GO:0046983
Trre12g03342 230 FunFam Transcription factor bHLH34 60 118 - -
Trre12g03342 230 PANTHER BHLH TRANSCRIPTION FACTOR 4 230 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre12g03342 230 SMART finulus 75 126 IPR011598 GO:0046983
Trre12g03342 230 Gene3D - 72 147 IPR036638 GO:0046983
Trre12g03342 230 Coils Coil 117 172 - -
Trre12g03342 230 CDD bHLH_AtILR3_like 74 149 - -
Trre12g03342 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 120 IPR011598 GO:0046983
Trre12g03342 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 74 144 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03342 Trre-Chr12 48973498 48975487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03342 1 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.068 2.94e-110 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre12g03342 HLH 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03342 - - ccaj:109815088 370.933