Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03339 ATGAATGGAAGAAGATTATCTTTTGGATTTGGAAATGGTGGACATGATCTTGGTCCAAGTAGTACTCCACCAAGCAATGCTGGTTCTGATTATGGAAGTTTTATAGATTTCACAAGAGAAGATGTTGAGGCTTTGCTTAATGAGAAATCTAAAAGGAAAGACAGATTTAATTACAAGGAAAGATGTGAAAATATGATTGATTATATAAAAAGGCTTAAGGTTTGCATTAGATGGTTCCAAGACCTTGAATTGAGCTACTCATTAGAGCAAGAGAAATTGAAGAGTTCATTGGAATTGTCCCAACAAAAATGCATGGAAATAGAGTTGTTGCTCAAAATCAAAGAAGAAGAATTGAATTCAATTATTACAGAAATGAGAAGGAATTGTGCTTCTTTGCAAGAGAAGTTAGTGAAGGAAGAAACAGAAAAATCGGCCGCAATGGAATCTCTTGTTAAAGAGAGAGAGGCTAGGCTTGACTTTGAAAGGTCACAGACAACACTATCAGAAGATCTCGGGAGAGCTCAACGAGAGCTTGAAACTGCGAATCAGAAGATAGCATCGCTCAATGAGATGTACAAGCGGTTGCAAGAATATATAACAAGCTTACAGCAGTACAACGGAAAACTTCATTCTGAGCTGTCAACAGTTGAAGGCGAACTCAAACGTGTAGAGAAAGAGAAAGCAACCGTAGTCGAAAACCTTACATTGTTAAAGGGCCAACTTGCTTTGTCTACTGCTTCTCAAGAAGAGGCTATAAAACAGAAAGATGCTTTTGCAAGTGAAGTTACATCCCTACGAGGCGAGTTGCAACAAGTGAGGGATGATCGAGACCGCCAAATATCTCAAGTGCAAACTTTAAGTACTGAAATAGTGAAGTTTAAAGATTCTTCAGAAAAGTCCGGTTCTGAACTGAACAACTTGACCATGAAAACACATGAATTAGAGACAAAATGTACTTTGCAAGATAATCATATAAAGGAATTACAAGAGAAGTTAACGATTGCAGAGAACAAATTGGAGGTTTGTGATATATCTGCAATCGAGACAAAAACAGAATTCGAAGGTCAACAAAAACTCGTAAATGAGTTAGAAAAACGATTGGCAGACGCAGAATACAAACTTATAGAAGGGGAGAAGCTGAGGAAAGAATTACATAATACCATTTTGGAACTGAAAGGGAACATTCGTGTGTTCTGTAGAGTACGGCCTTTGTTACCTGATGAGAGTTGCAGTACAGAAGGAAAGATTATATCTTATCCCTCTTCAATGGAAGCTGCTGGACGAGGCATTGAATTGGCACAAAATGGCCAAAAGCATTCTTTTACATTTGATAGAGTGTTTGCACCTGATGCATCGCAACAAGAAGTTTTTACAGAAATTTCACAACTTGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTCGCATATGGTCAGACAGGTTCCGGGAAAACCTATACGATGATGGGCAGGCCTGGACATCCAGGAGAAAAGGGCTTAATACCTCGTTCGCTAGAACAAATATTTCAAACAAGACAGTCTCAACAACCACAAGGATGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAGACGATCCGTGATTTGTTGTCTACGAATAAGTCCTCATCAGATGCGAATGGTACTCCTGGGAAGCAATACACAATCAAACATGATGCGAATGGAAATACACATGTTTCTGATCTTACAGTGGTGGATGTTCAAAGTGTAAAAGAGGTTGCGTTTCTTTTAAATCAAGCGGCGACCAGCAGATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCAAGAAGTCATTTCGTATTTACTCTTCGAATATACGGTGTAAACGAGAGCACTGACCAACAAGTACAAGGTGTTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGAAGTGGCTCAACCGGGGACCGACTGAAAGAAACTCAAGCAATAAATAAAAGTTTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATTCCATTCAGGAACTCAAAACTTACATATCTACTTCAGCCTTGTCTAGGCGGAGATTCAAAAACATTAATGTTTGTAAACGTCGCTCCTGACAATGCTTCAGCTGGAGAGTCACTATGCTCACTCCGGTTTGCATCAAGAGTAAATGCTTGTGAAATCGGGACACCTCGTCGCACCACCACCAACAGTCGTCCTACTGAATCTCGCTTAAGCTATTTCTAA 2259 0.3922 MNGRRLSFGFGNGGHDLGPSSTPPSNAGSDYGSFIDFTREDVEALLNEKSKRKDRFNYKERCENMIDYIKRLKVCIRWFQDLELSYSLEQEKLKSSLELSQQKCMEIELLLKIKEEELNSIITEMRRNCASLQEKLVKEETEKSAAMESLVKEREARLDFERSQTTLSEDLGRAQRELETANQKIASLNEMYKRLQEYITSLQQYNGKLHSELSTVEGELKRVEKEKATVVENLTLLKGQLALSTASQEEAIKQKDAFASEVTSLRGELQQVRDDRDRQISQVQTLSTEIVKFKDSSEKSGSELNNLTMKTHELETKCTLQDNHIKELQEKLTIAENKLEVCDISAIETKTEFEGQQKLVNELEKRLADAEYKLIEGEKLRKELHNTILELKGNIRVFCRVRPLLPDESCSTEGKIISYPSSMEAAGRGIELAQNGQKHSFTFDRVFAPDASQQEVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPGEKGLIPRSLEQIFQTRQSQQPQGWKYEMQVSMLEIYNETIRDLLSTNKSSSDANGTPGKQYTIKHDANGNTHVSDLTVVDVQSVKEVAFLLNQAATSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNVAPDNASAGESLCSLRFASRVNACEIGTPRRTTTNSRPTESRLSYF 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03339 752 PRINTS Kinesin heavy chain signature 680 701 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 PRINTS Kinesin heavy chain signature 470 491 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 PRINTS Kinesin heavy chain signature 600 617 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 PRINTS Kinesin heavy chain signature 631 649 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 ProSiteProfiles Kinesin motor domain profile. 394 730 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 Gene3D Kinesin motor domain 339 732 IPR036961 -
Trre12g03339 752 Coils Coil 115 149 - -
Trre12g03339 752 Coils Coil 353 380 - -
Trre12g03339 752 Coils Coil 206 233 - -
Trre12g03339 752 Pfam Kinesin motor domain 400 728 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 SMART kinesin_4 392 738 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03339 752 MobiDBLite consensus disorder prediction 544 564 - -
Trre12g03339 752 FunFam Kinesin-like protein 340 732 - -
Trre12g03339 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 728 IPR027417 -
Trre12g03339 752 CDD KISc_C_terminal 392 732 - -
Trre12g03339 752 Coils Coil 325 345 - -
Trre12g03339 752 PANTHER KINESIN-LIKE PROTEIN KLP-3 247 741 IPR027640 GO:0003777|GO:0007018
Trre12g03339 752 SUPERFAMILY Tropomyosin 205 375 - -
Trre12g03339 752 Coils Coil 164 198 - -
Trre12g03339 752 ProSitePatterns Kinesin motor domain signature. 630 641 IPR019821 GO:0003777|GO:0005524|GO:0007018
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03339 Trre-Chr12 48943740 48950951 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03339 79 727 Calmodulin-binding Proteins AT5G65930 31.515 3.64e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03339 K10405 - gmx:100801196 1253.04