Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03338 ATGGTTGGAACTCCAATGAATGGAAGAAGATTATCTTTTGGATTTGGAAATGGTGGACATGATCTTGGTCCAAGTAGTACTCCACCAAGCAATGCTGGTTCTGATTATGGAAGTTTTATAGATTTCACAAGAGAAGATGTTGAGGCTTTGCTTAATGAGAAATCTAAAAGGAAAGACAGATTTAATTACAAGGAAAGATGTGAAAATATGATTGATTATATAAAAAGGCTTAAGGTTTGCATTAGATGGTTCCAAGACCTTGAATTGAGCTACTCATTAGAGCAAGAGAAATTGAAGAGTTCATTGGAATTGTCCCAACAAAAATGCATGGAAATAGAGTTGTTGCTCAAAATCAAAGAAGAAGAATTGAATTCAATTATTACAGAAATGAGAAGGAATTGTGCTTCTTTGCAAGAGAAGTTAGTGAAGGAAGAAACAGAAAAATCGGCCGCAATGGAATCTCTTGTTAAAGAGAGAGAGGCTAGGCTTGACTTTGAAAGGTCACAGACAACACTATCAGAAGATCTCGGGAGAGCTCAACGAGAGCTTGAAACTGCGAATCAGAAGATAGCATCGCTCAATGAGATGTACAAGCGGTTGCAAGAATATATAACAAGCTTACAGCAGTACAACGGAAAACTTCATTCTGAGCTGTCAACAGTTGAAGGCGAACTCAAACGTGTAGAGAAAGAGAAAGCAACCGTAGTCGAAAACCTTACATTGTTAAAGGGCCAACTTGCTTTGTCTACTGCTTCTCAAGAAGAGGCTATAAAACAGAAAGATGCTTTTGCAAGTGAAGTTACATCCCTACGAGGCGAGTTGCAACAAGTGAGGGATGATCGAGACCGCCAAATATCTCAAGTGCAAACTTTAAGTACTGAAATAGTGAAGTTTAAAGATTCTTCAGAAAAGTCCGGTTCTGAACTGAACAACTTGACCATGAAAACACATGAATTAGAGACAAAATGTACTTTGCAAGATAATCATATAAAGGAATTACAAGAGAAGTTAACGATTGCAGAGAACAAATTGGAGGTTTGTGATATATCTGCAATCGAGACAAAAACAGAATTCGAAGGTCAACAAAAACTCGTAAATGAGTTAGAAAAACGATTGGCAGACGCAGAATACAAACTTATAGAAGGGGAGAAGCTGAGGAAAGAATTACATAATACCATTTTGGAACTGAAAGGGAACATTCGTGTGTTCTGTAGAGTACGGCCTTTGTTACCTGATGAGAGTTGCAGTACAGAAGGAAAGATTATATCTTATCCCTCTTCAATGGAAGCTGCTGGACGAGGCATTGAATTGGCACAAAATGGCCAAAAGCATTCTTTTACATTTGATAGAGTGTTTGCACCTGATGCATCGCAACAAGAAGTTTTTACAGAAATTTCACAACTTGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTCGCATATGGTCAGACAGGTTCCGGGAAAACCTATACGATGATGGGCAGGCCTGGACATCCAGGAGAAAAGGGCTTAATACCTCGTTCGCTAGAACAAATATTTCAAACAAGACAGTCTCAACAACCACAAGGATGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAATGAGACGATCCGTGATTTGTTGTCTACGAATAAGTCCTCATCAGATGCGAATGGTACTCCTGGGAAGCAATACACAATCAAACATGATGCGAATGGAAATACACATGTTTCTGATCTTACAGTGGTGGATGTTCAAAGTGTAAAAGAGGTTGCGTTTCTTTTAAATCAAGCGGCGACCAGCAGATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCAAGAAGTCATTTCGTATTTACTCTTCGAATATACGGTGTAAACGAGAGCACTGACCAACAAGTACAAGGTGTTCTAAATCTCATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGAAGTGGCTCAACCGGGGACCGACTGAAAGAAACTCAAGCAATAAATAAAAGTTTGTCATCATTAAGTGATGTTATATTTGCCTTGGCCAAGAAGGAGGATCATATTCCATTCAGGAACTCAAAACTTACATATCTACTTCAGCCTTGTCTAGGCGGAGATTCAAAAACATTAATGTTTGTAAACGTCGCTCCTGACAATGCTTCAGCTGGAGAGTCACTATGCTCACTCCGGTTTGCATCAAGAGTAAATGCTTGTGAAATCGGGACACCTCGTCGCACCACCACCAACAGTCGTCCTACTGAATCTCGCTTAAGCTATTTCTAA 2274 0.3927 MVGTPMNGRRLSFGFGNGGHDLGPSSTPPSNAGSDYGSFIDFTREDVEALLNEKSKRKDRFNYKERCENMIDYIKRLKVCIRWFQDLELSYSLEQEKLKSSLELSQQKCMEIELLLKIKEEELNSIITEMRRNCASLQEKLVKEETEKSAAMESLVKEREARLDFERSQTTLSEDLGRAQRELETANQKIASLNEMYKRLQEYITSLQQYNGKLHSELSTVEGELKRVEKEKATVVENLTLLKGQLALSTASQEEAIKQKDAFASEVTSLRGELQQVRDDRDRQISQVQTLSTEIVKFKDSSEKSGSELNNLTMKTHELETKCTLQDNHIKELQEKLTIAENKLEVCDISAIETKTEFEGQQKLVNELEKRLADAEYKLIEGEKLRKELHNTILELKGNIRVFCRVRPLLPDESCSTEGKIISYPSSMEAAGRGIELAQNGQKHSFTFDRVFAPDASQQEVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPGEKGLIPRSLEQIFQTRQSQQPQGWKYEMQVSMLEIYNETIRDLLSTNKSSSDANGTPGKQYTIKHDANGNTHVSDLTVVDVQSVKEVAFLLNQAATSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGVLNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNVAPDNASAGESLCSLRFASRVNACEIGTPRRTTTNSRPTESRLSYF 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03338 757 Coils Coil 120 154 - -
Trre12g03338 757 Coils Coil 358 385 - -
Trre12g03338 757 CDD KISc_C_terminal 397 737 - -
Trre12g03338 757 Gene3D Kinesin motor domain 342 737 IPR036961 -
Trre12g03338 757 SMART kinesin_4 397 743 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 733 IPR027417 -
Trre12g03338 757 Coils Coil 330 350 - -
Trre12g03338 757 PRINTS Kinesin heavy chain signature 475 496 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 PRINTS Kinesin heavy chain signature 685 706 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 PRINTS Kinesin heavy chain signature 605 622 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 PRINTS Kinesin heavy chain signature 636 654 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 Coils Coil 169 203 - -
Trre12g03338 757 FunFam Kinesin-like protein 345 737 - -
Trre12g03338 757 MobiDBLite consensus disorder prediction 549 569 - -
Trre12g03338 757 ProSitePatterns Kinesin motor domain signature. 635 646 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre12g03338 757 ProSiteProfiles Kinesin motor domain profile. 399 735 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre12g03338 757 PANTHER KINESIN-LIKE PROTEIN KLP-3 252 746 IPR027640 GO:0003777|GO:0007018
Trre12g03338 757 Coils Coil 211 238 - -
Trre12g03338 757 SUPERFAMILY Tropomyosin 210 380 - -
Trre12g03338 757 Pfam Kinesin motor domain 405 733 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03338 Trre-Chr12 48943725 48950951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03338 84 732 Calmodulin-binding Proteins AT5G65930 31.515 3.06e-79 275