LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre12g03336	ATGGTAATAATTCAACAATATATGGATGTTATAAAGTCTACATTTTGCCTTGTTTTGGTTCTTAATATTGTAGCAGTTATCAGCATTGAAGAAAAGAAAGAAACAACAGATGAAGAATTCATTAGCAAATTATTTGATCCTGTATCTGGATTATTGGATGAGGATACGGTAGAGATACTATGGATACTTTGCATGGAAGATATGATTCATGTAAGGAAAGATATTGGAGATCTTGGCTTATGCCTACCAAAGGAATCACTTAGTAGCAACAATGAAATCAGCACAGAAATTGGATCAATATCAAGAGAAAACATACAAAAATTGATTAGTACTTGCAATCCACAGTTGAAGGAAAACTTTCTTAACTGTTTGAGAAAAAACAATGTTCCATGCCAAGATGAATCCAAGAATTTGAAAGATGGTTACGAGGGATCAGGTTTATCTAGAAGATATCTACGTCGAGTTTCACCTCGACACTTGGGAGAAAAGAAAGACAAAGATAATGATAATGATGGATCATCTAAAAAATCTAAAAGTGATAGTGATTCTGATTTTGATAAATCGTCAAAAGATGATAGTGATTCTGATAAAAAGTCGAAGAAGAAGTCGTCTGAGTCTAAACACAAGAAAGCAGTTATTGATGCCATGGTTATATCTGCATTGGTGACATTTACATTTGCAGCATGTCTCTTTTTATGTTGTTGTAAGTGTTGTGGAAGTGGTAGAGACAGACAGACAGATGAAAGGCCACTACTCAGCATGAGCATGAGTGATTATTCTGTTGGTTCTTCTTCAAATAATAACCACTCAAAACTTTCACTAAACGAGGAGAAACATGGAGTACAATCAATAAGTAATACTCTTCATGATGACAAAAAGAACTCAATGAAAGAAGATGCTTCAAGACCATCATTTGACCTTAAACCTCCACCTGGTAGGGTAGGATCTGGTATTCCGCCTTTGAAACCTCCTCCGGGAAGACCTGATCCTCTTCCACCGGAACCAGCACCGGTTCCGGCTATTGATTATGCCAAAAATCCCCCGCCTCCTCCTCCGCCTCCTGGACTATCAACGCCTAGTAGTGGTGGCCCTCCTCCAGGATTACCGAAGCCTAGCAGTGGTGGCCCTCCTCCACCGCCACCACCTGGAAATGGTGGTCCTAAGCCTCCCCCACCGCCACCACCTCGTGGGAAACCGGGCGGTCCTCGTCCACCACCGCCTCCTAAGGGTGGTGGTCCTCCCAGGGCTCCTCCACCATTTGGCAAAAAGAGTCCTAAACCTTTAGCTGGTGGAGCAAAAGTTCAAGGGAAAGTTGAAGATGCTTCAGAAGGTGAAGGTGATGCTCCTAAAACTAAGTTAAAGCCTTTTTTTTGGGACAAGGTTCAAGCAGACTCGGATCAAACTATGGTTTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAAACACTTTTTGGATATACTAATCCATCAATGGAAAAAGGCAAAGGTGGAATGAAGAAAGATGCTGCCGCTCGTGCTTCTTCCCCTCAGTATATCACTGTTATTGACTCAAAGAAAGCACAAAATTTATCAATTTTGTTAAAAGCATTAAATGTGACATTAGAAGAAGTTCGAGATGCGCTACTTGAAGGAAATGAGCTCCCAACGGAATTCCTTCAAACACTGATGAAGATGGCTCCAACCTCAGAGGAAGAGCTTAAGCTTAGACTATTCAGTGGTAATATTTCCCAACTTGGTCCTGCTGATCGGTTCCTGAAATCCCTGGTTGAGATTCCATTTGCCTTTAAACGAATGGACGCATTGCTTTACATGAGTACTCTTCGAGAGGAACTCAACGGTACCCGAGATTCTTTTGCTACTTTAGAGGTTGCTTGTAAGGAACTAAGAAGCAGTAGACTGTTCCTCAAGCTTCTAGAAGCAGTTCTAAAAACAGGAAACCGAATGAACGACGGAACATTCCGTGGAGGCGCACTTGCATTCAAACTTGATACACTACTAAAATTGTCTGATGTAAAAGGAGTAGATGGAAAAATAACACTCTTACACTTTGTTGTTCAGGAGATAATCCGAACCGAAGGAATAAGAGCAGCTCGAAATATGAGAGAGAGTACCAGTTTCTCTAGTATAAAAACCGACGACCTTCTCGAAGACATTAGTCAAGAATCAGAAGACCACTACCGCGAAATAGGTCTTCAAGTTGTTTCGCGTTTGAGTAGTGAGCTCGAGAATGTGAAGAAAGCAGCAGCATTAGATGCTGATGGTTTAACAGGAACAACAGCTAAATTAGGCCATGGTCTACTAAAAACAAGAGATTTCGTAAAGAAAGAGATGGCGGAAAATTTAGAGAATGACAAAGGGTTTTATGAAACAGTTAAGAGTTTTGTGGAGAAAGCCGAAGTTGATGTCACAAGTTTGTTAGAAGAAGAGAAGAAAATCATGGCTCTTGTGAAAAGTACTGGTGATTACTTTCATGGGAGTACAGGGAGAGATGAAGGGTTGAGATTGTTTGTAATCGTACGCGATTTCTTAATAATGTTGGATAAAGTTTGCAAAGAAATTCAAAAAGCACCAAAGAAGCCAATAACAAAGAATGTGAAACATGAAAGTGAAACAAAGAATGTGAAACAAGAAAATGAGAAAAAGAATGTAAAACAAGAAAGTGAAACAAAGAATGTGAAACAAGATACTGCTGGATCTAGAGGGCCATCAACCTCGAAAACTCGTCCACCACCACCTGATTTTCGGCAGAAATTGTTTCCAGCAGTGGTAGATAGAAGAGTGGATGATTTTAGTTCAGATGAAGACAGTCCATAG	2832	0.4018	MVIIQQYMDVIKSTFCLVLVLNIVAVISIEEKKETTDEEFISKLFDPVSGLLDEDTVEILWILCMEDMIHVRKDIGDLGLCLPKESLSSNNEISTEIGSISRENIQKLISTCNPQLKENFLNCLRKNNVPCQDESKNLKDGYEGSGLSRRYLRRVSPRHLGEKKDKDNDNDGSSKKSKSDSDSDFDKSSKDDSDSDKKSKKKSSESKHKKAVIDAMVISALVTFTFAACLFLCCCKCCGSGRDRQTDERPLLSMSMSDYSVGSSSNNNHSKLSLNEEKHGVQSISNTLHDDKKNSMKEDASRPSFDLKPPPGRVGSGIPPLKPPPGRPDPLPPEPAPVPAIDYAKNPPPPPPPPGLSTPSSGGPPPGLPKPSSGGPPPPPPPGNGGPKPPPPPPPRGKPGGPRPPPPPKGGGPPRAPPPFGKKSPKPLAGGAKVQGKVEDASEGEGDAPKTKLKPFFWDKVQADSDQTMVWNQLKAGSFQFNEEMMETLFGYTNPSMEKGKGGMKKDAAARASSPQYITVIDSKKAQNLSILLKALNVTLEEVRDALLEGNELPTEFLQTLMKMAPTSEEELKLRLFSGNISQLGPADRFLKSLVEIPFAFKRMDALLYMSTLREELNGTRDSFATLEVACKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGALAFKLDTLLKLSDVKGVDGKITLLHFVVQEIIRTEGIRAARNMRESTSFSSIKTDDLLEDISQESEDHYREIGLQVVSRLSSELENVKKAAALDADGLTGTTAKLGHGLLKTRDFVKKEMAENLENDKGFYETVKSFVEKAEVDVTSLLEEEKKIMALVKSTGDYFHGSTGRDEGLRLFVIVRDFLIMLDKVCKEIQKAPKKPITKNVKHESETKNVKQENEKKNVKQESETKNVKQDTAGSRGPSTSKTRPPPPDFRQKLFPAVVDRRVDDFSSDEDSP	943

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	158	209	-	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	313	424	-	-
	Trre12g03336	943	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	443	878	IPR015425	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	925	943	-	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	865	943	-	-
	Trre12g03336	943	Coils	Coil	872	892	-	-
	Trre12g03336	943	Gene3D	Formin, FH2 domain	448	898	IPR042201	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	277	451	-	-
	Trre12g03336	943	Pfam	Formin Homology 2 Domain	447	852	IPR015425	-
	Trre12g03336	943	Coils	Coil	526	546	-	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	865	899	-	-
	Trre12g03336	943	SMART	it6_source	443	867	IPR015425	-
	Trre12g03336	943	PANTHER	FORMIN-RELATED	155	894	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	283	304	-	-
	Trre12g03336	943	MobiDBLite	consensus disorder prediction	157	209	-	-
	Trre12g03336	943	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	515	865	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre12g03336	Trre-Chr12	48912433	48917698	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre12g03336	420	934	FH2 protein (formin) Gene Family	AT5G54650	60.232	0.0	587

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre12g03336	-		-	gmx:100792872	727.628