Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03322 ATGACCACATATTTTGACGGTCATGCTCTAAAAACACTAGTGGTTGACGATTTTTCAATTATTCGGCGCCGTATTTTGTTCTTCGTTTTCTTTAAGGTTTATATACTTTTGTCGAAACTATTGAGGCTGGTTATTAGGATTTCTCACACAAGACATCGAATTCGTTATTATAGTATGGACTCGCAACAACTTTATAGTTACAGTATGACTAATACAGGATTACCTTACATGCAATCTTTTTCCACTATTCCATCACTACAAAATGGTTTGCTTGGATCCTTGAAAGTTGGTGTAGGAAACTCACCTGATTCGCCGTTTTCTTCTCATTTTGATTCTGATACTTATTCTGCATTTAGTGACGGCCATGAGCATTACAATTCGGGCGAAATCTTATCTGGTATAAGCTCCTCTTATAACTCATCACTGGAAACCAACCATTATATGCATAGATCGGTTTCATCCGTCGACAGTCTCAAAGAAAGTTTGCAATTATATTCTGCTAGAAATTCTTCTCTACCAACTAACCAGAAAATCAGACATGTTTTGTTGGAACTAGAAACTGCGTTGATGGCCCCTGATGATAACGAAGTTACGACATCTAATTCTTCATTGGGTGATAGCATCAGGGAGACGGCATCCGGCCCGAGATATAGATCATGGAGCCATGAGAACCAAGGGTCACAATATATTCAAAGTCAGCCATCACATGTTACCAACGGTAGGCAATCAAATGAAGTTGTGCATGTTGAGAAACGGAGAAAGTTGGAGGAGGAATCATCTCTACAAGCGTTTCCATCAGGCGATTTAAAGCAATTACTGATTGCATGTGCCAAAGCCATGGCTGAAAACAACACTCAAGGTTTTGACCGATATATAGAAATGGCTAGAAATGCTGTGTCAATCAATGGAGAGCCAATCCAGAGGCTTGGTGCTTATATAGTAGAAGGGCTTGTTGCAAGGAAGGAAGCGTCAGGGAATAGCATCTATCACGCTCTTAAGTGCCGTGAGCCAGAAGGCGAAGAGTTACTCACATACATGCAACTGCTTTTCGAAATCTGTCCCTACTTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCCGAAGCTTGCAGGAATGAGGATCGCATACACATCATAGATTTTCAGATCGCTCAAGGAACTCAATGGATGACACTTCTTCAAGCGCTTGCAGCAAGACCTGGGGGGGCTCCTCATGTGCGGATCACAGGAATCGATGACCCCGTCTCTAAATATGCACGCGGCGATGGACTAGAAGTAGTCGGGAAAAGATTGGCCATGATGTCCAAGAAATTCAACATCCCGGTTGAGTTTCACGGTATTCCTGTTTTCGGTCCTGACGTTACAAGAGACATGCTTGATATCAGAGCCGGAGAAGCTTTGGCTGTGAATTTTCCATTGCAACTACATCACACAGCTGATGAGAGTGTCGATGTGAACAATCCAAGAGATGGACTTTTAAGATTGGTCAAATCTCTTTCTCCAAAAGTGGTCACACTTGTGGAGCAAGAATCAAACACAAACACAACACCTTTCTTCAACAGGTTCATAGAAACTTTAGATTACTACTTGGCAATTTTCGAGTCCATCGATGTCACGCTCTCGCGAGACAGCAAAGAAAGGATTAACGTCGAGCAACATTGTTTGGCTCGTGATATCGTGAATGTCATTGCTTGCGAAGGCAAGGAAAGAGTCGAGCGGCATGAACTGTTCGAACACTACACACTAGTGGAGAAAGATGGGGCAATGCTTTTAGGGTGGAAGAACAGAAATTTGATATCAGCTTCAGCTTGGCATTGA 1821 0.4239 MTTYFDGHALKTLVVDDFSIIRRRILFFVFFKVYILLSKLLRLVIRISHTRHRIRYYSMDSQQLYSYSMTNTGLPYMQSFSTIPSLQNGLLGSLKVGVGNSPDSPFSSHFDSDTYSAFSDGHEHYNSGEILSGISSSYNSSLETNHYMHRSVSSVDSLKESLQLYSARNSSLPTNQKIRHVLLELETALMAPDDNEVTTSNSSLGDSIRETASGPRYRSWSHENQGSQYIQSQPSHVTNGRQSNEVVHVEKRRKLEEESSLQAFPSGDLKQLLIACAKAMAENNTQGFDRYIEMARNAVSINGEPIQRLGAYIVEGLVARKEASGNSIYHALKCREPEGEELLTYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEVVGKRLAMMSKKFNIPVEFHGIPVFGPDVTRDMLDIRAGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRDSKERINVEQHCLARDIVNVIACEGKERVERHELFEHYTLVEKDGAMLLGWKNRNLISASAWH 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03322 606 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 247 579 IPR005202 -
Trre12g03322 606 MobiDBLite consensus disorder prediction 217 243 - -
Trre12g03322 606 MobiDBLite consensus disorder prediction 194 243 - -
Trre12g03322 606 ProSiteProfiles GRAS family profile. 260 606 IPR005202 -
Trre12g03322 606 MobiDBLite consensus disorder prediction 194 209 - -
Trre12g03322 606 Pfam GRAS domain family 269 580 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03322 Trre-Chr12 48760779 48764155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03322 259 605 GRAS Transcription Factor Family AT5G48150 57.218 1.20e-150 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre12g03322 GRAS 6.8e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03322 - - gmx:100799073 827.78