Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03309 ATGTTCAGAAATGTTATCTCAATTGATGAATATGCATCATGCTTTGAAAACATTGATCTATTGGCACCTTACAAGAAATGGACCAAGCTGGACGCTGCTAAGAATCCAAAGTTTGATCAGTGTGGGCCACAAATTGATATCTTCTCTGAAAGGGTTCAAGCAACATTCATAGTTAGTGATCCTGTTGATTGGAGCAGGGACATACAGATAAGCCTTATGATATACTGGTGCCTAACACTGTTAGGTACCCGTTATGGTGCTAGTTTGCGTAAGCAGATTAAGAAGATGGAAGTTAGTCAGCACATCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAAGCTGTAGGAATATGGGGATGTAAGGATTGCGGTAAAGTGAAAGCGTGGGGAGCTTACACTTTGAAATCCTCAAGGGAAACCAACAGGAATTATTGGCCATCTCGTGCTGTCACATTCCTAGAGAACCATGATACAGGGTCCACACAAGTACGTGATCTGTTTCTTTTTCTGTCAAAGTATGATGCATTAGATATCAACATTGGTGATTATGTGGAATTTATCCCATTATCACCTTCACCTTGTGGCCACTGGACGTTCGCAAGAGATAAGCTCATGCAGGGATATACATATATCTTGACGCATCCTGAAACTGTCAGAGGTGGCCAGCTTTAG 684 0.4094 MFRNVISIDEYASCFENIDLLAPYKKWTKLDAAKNPKFDQCGPQIDIFSERVQATFIVSDPVDWSRDIQISLMIYWCLTLLGTRYGASLRKQIKKMEVSQHIKFFCEFCGKYAVKRKAVGIWGCKDCGKVKAWGAYTLKSSRETNRNYWPSRAVTFLENHDTGSTQVRDLFLFLSKYDALDINIGDYVEFIPLSPSPCGHWTFARDKLMQGYTYILTHPETVRGGQL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03309 227 Pfam Ribosomal L37ae protein family 82 142 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre12g03309 227 SUPERFAMILY (Trans)glycosidases 136 221 IPR017853 -
Trre12g03309 227 PANTHER ZGC:171772 82 141 - -
Trre12g03309 227 Gene3D - 80 147 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre12g03309 227 SUPERFAMILY Zn-binding ribosomal proteins 82 141 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03309 Trre-Chr12 48402348 48405507 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03309 82 141 Cytoplasmic Ribosomal Protein Gene Family AT3G10950 85.000 3.40e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03309 K02921 - gmx:100784543 120.168