Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03308 ATGGAAGTTAGTCAGCACAGCAAATTTTTCTGTGAATTTTGTGGAAAGTATGCTGTGAAGAGAAAAGCTGTAGGAATATGGGGATGTAAGGATTGCGGTAAAATGAAAGCATGGGGAGCTTACACTTTGAAATTTTTGCTTATTGGAGAGGAAGGTAGTGTTTTATTTGTGGACAAATTCCATTTCTTGAATTTTAAACCGGAGAATGTTTTGCAGGGCCATTCACCATTTAGACAATTGGCCAATAGATTTGAGGATAAACTCGTTGTTGCTGCGGGAAAAGGGGATCCAGCTTCAGTGATTGTCTGA 309 0.3916 MEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDCGKMKAWGAYTLKFLLIGEEGSVLFVDKFHFLNFKPENVLQGHSPFRQLANRFEDKLVVAAGKGDPASVIV 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03308 102 Gene3D - 1 47 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre12g03308 102 Pfam Ribosomal L37ae protein family 1 44 IPR002674 GO:0003735|GO:0005840|GO:0006412
Trre12g03308 102 SUPERFAMILY Zn-binding ribosomal proteins 1 43 IPR011332 GO:0006412
Trre12g03308 102 PANTHER 60S RIBOSOMAL PROTEIN L37A-2 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03308 Trre-Chr12 48400433 48402232 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03308 1 43 Cytoplasmic Ribosomal Protein Gene Family AT3G60245 88.372 1.05e-24 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03308 K02921 - gmx:100305661 93.5893