Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03305 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAATTGGTGGGACACAGCATCAAGAAACATGAGATTTGATCATCAAAGTGGAGGAGGAACATCACAATCTTCAAATTCTTCTGCCATCACCAACAACAACATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTAGAGATAAAACCAAGATCTTCCATGGAAAATTCTTTTCATGATACTCAAAAACTTCAACAAAATCAAGACTCTTCAACTTCTTCTGACCCCAACTTGCATATGATGGGTTTAGGTCTTTCTTCTCATTCCATTGATTGGAATCAACCTTCTTTGATAAGAGGTGAGAAGGGAGCAGAGAATAGTTTCAGCACAATGTTACAAGAGAATTTGAGTTCAACAAGGAACAATTTTGAGCAAGAAAATGTGATGGGGATGTGTCAACAAGTGAATAGAAGTAATTTCTCTTTGGATCAAAATCAAAATCAATTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTACAAGCCAATGTTTACCAACAAATTTTCAAATGGATTCTTCAACTTTATATGGAACTCCACCAATTTTACAAGGTTCATTTGAGAATAGATCCATGAGTAGTTTTCCATATCCAACAAATAACTATGGATTAAATTCTAATAATGAGTTGAATATGAATATGCCTTCTAATGATTGGTCTAATAAAGTTCCTCAATTTTTGATGAGAACTTCACCTCCAAAACAACCTATCAATAACCAATTACATTTTACTAACAACACCCCCTTTTGGAATGCTTCTCATGAGGGTGCTAATTCCATCAAGGATGTTAGGTCAAGTTTCTTCCCTACTTTGCAACCTCAATTCTCCACCCCAAATTTTGATACACACTCAAAGAATATATCTGAGGTGAATACTGTGGTAAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGACCCGTAACGAAACCCCATCAACTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTGAGCACACCATATATGAAAATTGGAGCTCCAACAGAGATTCATCAGAATTCTAGTAAATCAAAAAAATCAGAGGGTGCAAAGCAAGACCTTAAAAGCCGAGGGCTATGTTTGGTACCGGTTTCTAGCACGTTTCCAGTGACTCATGAAACGACAGTTGATTTTTGGACACCAACATTCGGAGGAACATCAAGATAA 1323 0.3696 MADDDQFHHSSGNWWDTASRNMRFDHQSGGGTSQSSNSSAITNNNIVDFGWQNSDMVEIKPRSSMENSFHDTQKLQQNQDSSTSSDPNLHMMGLGLSSHSIDWNQPSLIRGEKGAENSFSTMLQENLSSTRNNFEQENVMGMCQQVNRSNFSLDQNQNQFSPQYSSGDSNVITSQCLPTNFQMDSSTLYGTPPILQGSFENRSMSSFPYPTNNYGLNSNNELNMNMPSNDWSNKVPQFLMRTSPPKQPINNQLHFTNNTPFWNASHEGANSIKDVRSSFFPTLQPQFSTPNFDTHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKIGAPTEIHQNSSKSKKSEGAKQDLKSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03305 440 Gene3D - 330 386 IPR036638 GO:0046983
Trre12g03305 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Trre12g03305 440 CDD bHLH_AtbHLH_like 326 377 IPR045239 -
Trre12g03305 440 SMART finulus 331 375 IPR011598 GO:0046983
Trre12g03305 440 MobiDBLite consensus disorder prediction 63 93 - -
Trre12g03305 440 MobiDBLite consensus disorder prediction 21 41 - -
Trre12g03305 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 119 421 - -
Trre12g03305 440 FunFam Transcription factor bHLH123 family 330 393 - -
Trre12g03305 440 MobiDBLite consensus disorder prediction 63 91 - -
Trre12g03305 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 384 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03305 Trre-Chr12 48370062 48373993 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03305 110 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.523 1.60e-66 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03305 - - gmx:100778697 544.658