Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03304 ATGGCTGATGATGATCAATTTCATCATTCAAGTGGAAATTGGTGGGACACAGCATCAAGAAACATGAGATTTGATCATCAAAGTGGAGGAGGAACATCACAATCTTCAAATTCTTCTGCCATCACCAACAACAACATAGTTGATTTTGGTTGGCAAAATTCAGATATGGTAGAGATAAAACCAAGATCTTCCATGGAAAATTCTTTTCATGATACTCAAAAACTTCAACAAAATCAAGACTCTTCAACTTCTTCTGACCCCAACTTGCATATGATGGGTTTAGGTCTTTCTTCTCATTCCATTGATTGGAATCAACCTTCTTTGATAGGTGAGAAGGGAGCAGAGAATAGTTTCAGCACAATGTTACAAGAGAATTTGAGTTCAACAAGGAACAATTTTGAGCAAGAAAATGTGATGGGGATGTGTCAACAAGTGAATAGAAGTAATTTCTCTTTGGATCAAAATCAAAATCAATTTAGTCCTCAATATAGTTCTGGAGATAGCAATGTTATTACAAGCCAATGTTTACCAACAAATTTTCAAATGGATTCTTCAACTTTATATGGAACTCCACCAATTTTACAAGGTTCATTTGAGAATAGATCCATGAGTAGTTTTCCATATCCAACAAATAACTATGGATTAAATTCTAATAATGAGTTGAATATGAATATGCCTTCTAATGATTGGTCTAATAAAGTTCCTCAATTTTTGATGAGAACTTCACCTCCAAAACAACCTATCAATAACCAATTACATTTTACTAACAACACCCCCTTTTGGAATGCTTCTCATGAGGGTGCTAATTCCATCAAGGATGTTAGGTCAAGTTTCTTCCCTACTTTGCAACCTCAATTCTCCACCCCAAATTTTGATACACACTCAAAGAATATATCTGAGGTGAATACTGTGGTAAAGAAAAGTGGAAGTGAGCCAGCACCCAAAAGGACCCGTAACGAAACCCCATCAACTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGAGACAGAATCACTGCACTCCAACAATTAGTGTCTCCTTTTGGAAAGACTGATACAGCCTCAGTGCTTTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAGGTTACAGTTTTGAGCACACCATATATGAAAATTGGAGCTCCAACAGAGATTCATCAGAATTCTAGTAAATCAAAAAAATCAGAGGGTGCAAAGCAAGACCTTAAAAGCCGAGGGCTATGTTTGGTACCGGTTTCTAGCACGTTTCCAGTGACTCATGAAACGACAGTTGATTTTTGGACACCAACATTCGGAGGAACATCAAGATAA 1320 0.3697 MADDDQFHHSSGNWWDTASRNMRFDHQSGGGTSQSSNSSAITNNNIVDFGWQNSDMVEIKPRSSMENSFHDTQKLQQNQDSSTSSDPNLHMMGLGLSSHSIDWNQPSLIGEKGAENSFSTMLQENLSSTRNNFEQENVMGMCQQVNRSNFSLDQNQNQFSPQYSSGDSNVITSQCLPTNFQMDSSTLYGTPPILQGSFENRSMSSFPYPTNNYGLNSNNELNMNMPSNDWSNKVPQFLMRTSPPKQPINNQLHFTNNTPFWNASHEGANSIKDVRSSFFPTLQPQFSTPNFDTHSKNISEVNTVVKKSGSEPAPKRTRNETPSTLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKIGAPTEIHQNSSKSKKSEGAKQDLKSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTSR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03304 439 SMART finulus 330 374 IPR011598 GO:0046983
Trre12g03304 439 MobiDBLite consensus disorder prediction 63 93 - -
Trre12g03304 439 FunFam Transcription factor bHLH123 family 329 392 - -
Trre12g03304 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Trre12g03304 439 Gene3D - 329 385 IPR036638 GO:0046983
Trre12g03304 439 MobiDBLite consensus disorder prediction 21 41 - -
Trre12g03304 439 CDD bHLH_AtbHLH_like 325 376 IPR045239 -
Trre12g03304 439 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 118 420 - -
Trre12g03304 439 MobiDBLite consensus disorder prediction 63 91 - -
Trre12g03304 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 383 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03304 Trre-Chr12 48370062 48373993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03304 110 439 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 43.377 1.29e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03304 - - gmx:100778697 538.11