Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03302 ATGAGTATAATTTTCTATGCTTATCATATACTTATATATTTTTCTCAAATTTCTCTAGCACTTAACACAATATCTCAATCCATTTCCTTAACAGATGATGGAAACACATTAGTTTCCAAAGGTGGAATCTATGAACTTGGATTCTTCACACCAGGAAATTCCAACAAACGTTACCTTGGAATTTGGTACAAGAATATTCCAATTCAAACTGTTGTTTGGGTTGCAAATAGAATCAATCCAATCAATGATTCATCTGGAACATTAACATTAAACAACATCACTGGAAACCTTGTCCTCACTCAGAAGAATAATGAAACTGTTGTTTGGTCTACAACATCGAATTCTCTTCGAAAAAAGTCAGTAGTAGCAATTCTTTTAGATACCGGAAATCTTGTGTTAATCGACGAGAAAGAAGAAAACAAAGAATCTAATTTCTTGTGGCAGAGTTTTGATTATCCTACTGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGACTTCAAAACCGGTCTTAATCGGCGTTTAACTGCTTGGAAAAGTCCCGATGATCCATCACCGAGCGATTTTTCTTACGGTATGGTTCCTCATAACTATCCTGATGCATATATGATGAAAGGTGATAAAAAATTCTACAGAAGTGGACCATGGAATGGTTTACGTTCAAGTGGTTCGCCACAAATTAGGCCGAATCCAATTTATGATTACAGGTTTGTTTATAATAAAGATGAATTTTACTACACTTATAGCCTAAAAAACTCGTCTGCTGTTACGCGATTAGTATTAAATGCAACTGCGTCCATTCGTTACCGTTATGTGTGGATTGAATCGGCGAAAAGATGGGAAATCTACACGTCGGTACCATTGGATTTATGTGATAGTTATGCCCTTTGTGGAGCCTATTCAAGTTGTGTTATATCTAATTCACCTGTGTGTCAATGTATGAAAGGTTTTAAACCTAAGTCGCCACAAGCGTGGTATGCAATGGATTGGTCTAATGGATGTGTCCGAAATAAGGCGTTGCGTTGCGAGGAAAAAAACAAGGATGGATTTGTCAAGTTAAGTGGTATGAAAGGGCCTGACACTACATATAGTTGGTTGGATCAAACAATTGGTTTGAAGGAATGTAGAGTGAAGTGTTTGAATAATTGTTCTTGTATGGCATATGCAAATTCAGATGTAAGAGGTGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATTTAATTGATATTAGACAATTTGCAGCTGGAGGGCAAGATTTGTATGTTAGAATGGATTCTTCAGAATTAGAACATGTCAATGAGGGTCACAAGAAGAAAGGAGTTATAGTGGCAGTAATAGTTTCTCTTGCAATGGCAATACTTTGTGGTATACTCTTACTTGGTTGGTGTTATGGACATAAATCAAGCACTTATGTAAAAGATTTCATTATCAAAGAAGATCATCAAAACAGTGGGATGCAGGTGGATGATGGAGACTTACCAGTCTTTAATTTATCAACAATAGCAAAAGCCACTAACAACTTTACAATCATTAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATTCTATCTGATGGAGTGGAAATTGCTGTGAAAAGACTTTCAACAAGCTCGGGCCAAGGATTGAATGAGTTTAAAAATGAAGTAAAATTGATTGCGAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGAAGGAGAAGAAAAAATGTTGGTTTATGAATACATGCCTAATAGTAGCTTGGACTCCTTTATATTTGATAAGCAGAAAAGTGAATTACTCGATTGGTCAAAGCGTTTCGACATTATATGTGGAATTGCTAGGGGACTTGTCTATCTTCATCAGGATTCGAGACTGAGGATTATTCACAGAGATCTAAAATTGAGTAATGTTTTACAAGATAAGGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCGGAGGAGATCAAAATGAAGGAAAAACAAGGAGAATAGTTGGAACATATGGTTACATGGCACCAGAATATGCTACCAATGGCTTATTTTCAGTGAAGTCAGATGTCTTCAGCTTCGGTGTTTTATTGATGGAGATTATATCGGGGAAGAGAAGTAGAGGATACTACAATCAAAACCAAAGCCACAATCTCATAGGCTATGCATGGAAACTTTGGAAAGAAGGAAAACCACTAAAATTGATTGATAAAAACATAGGAGACTCTTGTTTTATATCACAAATATTGCATTCTATTCATGTTAGTCTCTTATGTGTTCAACAAAATCCAGAGGATAGGCCAATAATGTCAAGTGTGATTCTAATGTTGGTAAGTGATTTTAAATTGCCTGAACCAAAACAGCCAGGATTCTTTTTCAAAGATTCAAGTGGAGGAGAGTCCTCCACAAGTAACCAACTGCTAAGTTCTACAAATGAAATAACCATTACATTATTGGAGGCTAGATGA 2475 0.3612 MSIIFYAYHILIYFSQISLALNTISQSISLTDDGNTLVSKGGIYELGFFTPGNSNKRYLGIWYKNIPIQTVVWVANRINPINDSSGTLTLNNITGNLVLTQKNNETVVWSTTSNSLRKKSVVAILLDTGNLVLIDEKEENKESNFLWQSFDYPTDTFLPEMKFGLDFKTGLNRRLTAWKSPDDPSPSDFSYGMVPHNYPDAYMMKGDKKFYRSGPWNGLRSSGSPQIRPNPIYDYRFVYNKDEFYYTYSLKNSSAVTRLVLNATASIRYRYVWIESAKRWEIYTSVPLDLCDSYALCGAYSSCVISNSPVCQCMKGFKPKSPQAWYAMDWSNGCVRNKALRCEEKNKDGFVKLSGMKGPDTTYSWLDQTIGLKECRVKCLNNCSCMAYANSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELEHVNEGHKKKGVIVAVIVSLAMAILCGILLLGWCYGHKSSTYVKDFIIKEDHQNSGMQVDDGDLPVFNLSTIAKATNNFTIINKIGEGGFGPVYKGILSDGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNSSLDSFIFDKQKSELLDWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKLSNVLQDKEMNPKISDFGMARIFGGDQNEGKTRRIVGTYGYMAPEYATNGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLIGYAWKLWKEGKPLKLIDKNIGDSCFISQILHSIHVSLLCVQQNPEDRPIMSSVILMLVSDFKLPEPKQPGFFFKDSSGGESSTSNQLLSSTNEITITLLEAR 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03302 824 SMART ntp_6 345 424 IPR003609 -
Trre12g03302 824 ProSiteProfiles Protein kinase domain profile. 508 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03302 824 CDD PAN_AP_plant 340 423 - -
Trre12g03302 824 PIRSF SRK 1 824 IPR024171 GO:0004674
Trre12g03302 824 ProSiteProfiles Bulb-type lectin domain profile. 21 146 IPR001480 -
Trre12g03302 824 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 769 - -
Trre12g03302 824 SMART blect_4 28 153 IPR001480 -
Trre12g03302 824 Pfam D-mannose binding lectin 70 179 IPR001480 -
Trre12g03302 824 SUPERFAMILY Protein kinase-like (PK-like) 490 779 IPR011009 -
Trre12g03302 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 584 787 - -
Trre12g03302 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 583 - -
Trre12g03302 824 CDD STKc_IRAK 514 779 - -
Trre12g03302 824 SMART serkin_6 508 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03302 824 Pfam Domain of unknown function (DUF3403) 784 824 IPR021820 GO:0004674
Trre12g03302 824 Gene3D Phosphorylase Kinase; domain 1 459 583 - -
Trre12g03302 824 Gene3D - 16 150 IPR036426 -
Trre12g03302 824 ProSiteProfiles PAN/Apple domain profile. 342 425 IPR003609 -
Trre12g03302 824 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Trre12g03302 824 Gene3D Transferase(Phosphotransferase) domain 1 584 785 - -
Trre12g03302 824 CDD B_lectin 33 153 IPR001480 -
Trre12g03302 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 341 424 - -
Trre12g03302 824 Pfam Protein tyrosine and serine/threonine kinase 509 776 IPR001245 GO:0004672|GO:0006468
Trre12g03302 824 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 184 IPR036426 -
Trre12g03302 824 Pfam PAN-like domain 342 410 IPR003609 -
Trre12g03302 824 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 17 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03302 Trre-Chr12 48339020 48342532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03302 440 794 Receptor kinase-like Gene Family AT4G23190 52.646 3.65e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g03302 PK_Tyr_Ser-Thr 6.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03302 - - gmx:100778155 1281.93