Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03301 ATGTCTTTAATCATAATGAGTATAATTTTCTATGCTTATCATATACTTATATATTTTTCTCAAATTTCTCTAGCACTTAACACAATATCTCAATCCATTTCCTTAACAGATGATGGAAACACATTAGTTTCCAAAGGTGGAATCTATGAACTTGGATTCTTCACACCAGGAAATTCCAACAAACGTTACCTTGGAATTTGGTACAAGAATATTCCAATTCAAACTGTTGTTTGGGTTGCAAATAGAATCAATCCAATCAATGATTCATCTGGAACATTAACATTAAACAACATCACTGGAAACCTTGTCCTCACTCAGAAGAATAATGAAACTGTTGTTTGGTCTACAACATCGAATTCTCTTCGAAAAAAGTCAGTAGTAGCAATTCTTTTAGATACCGGAAATCTTGTGTTAATCGACGAGAAAGAAGAAAACAAAGAATCTAATTTCTTGTGGCAGAGTTTTGATTATCCTACTGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGACTTCAAAACCGGTCTTAATCGGCGTTTAACTGCTTGGAAAAGTCCCGATGATCCATCACCGAGCGATTTTTCTTACGGTATGGTTCCTCATAACTATCCTGATGCATATATGATGAAAGGTGATAAAAAATTCTACAGAAGTGGACCATGGAATGGTTTACGTTCAAGTGGTTCGCCACAAATTAGGCCGAATCCAATTTATGATTACAGGTTTGTTTATAATAAAGATGAATTTTACTACACTTATAGCCTAAAAAACTCGTCTGCTGTTACGCGATTAGTATTAAATGCAACTGCGTCCATTCGTTACCGTTATGTGTGGATTGAATCGGCGAAAAGATGGGAAATCTACACGTCGGTACCATTGGATTTATGTGATAGTTATGCCCTTTGTGGAGCCTATTCAAGTTGTGTTATATCTAATTCACCTGTGTGTCAATGTATGAAAGGTTTTAAACCTAAGTCGCCACAAGCGTGGTATGCAATGGATTGGTCTAATGGATGTGTCCGAAATAAGGCGTTGCGTTGCGAGGAAAAAAACAAGGATGGATTTGTCAAGTTAAGTGATGTAAGAGGTGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATTTAATTGATATTAGACAATTTGCAGCTGGAGGGCAAGATTTGTATGTTAGAATGGATTCTTCAGAATTAGAACATGTCAATGAGGGTCACAAGAAGAAAGGAGTTATAGTGGCAGTAATAGTTTCTCTTGCAATGGCAATACTTTGTGGTATACTCTTACTTGGTTGGTGTTATGGACATAAATCAAGCACTTATGTAAAAGATTTCATTATCAAAGAAGATCATCAAAACAGTGGGATGCAGGTGGATGATGGAGACTTACCAGTCTTTAATTTATCAACAATAGCAAAAGCCACTAACAACTTTACAATCATTAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATTCTATCTGATGGAGTGGAAATTGCTGTGAAAAGACTTTCAACAAGCTCGGGCCAAGGATTGAATGAGTTTAAAAATGAAGTAAAATTGATTGCGAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGAAGGAGAAGAAAAAATGTTGGTTTATGAATACATGCCTAATAGTAGCTTGGACTCCTTTATATTTGATAAGCAGAAAAGTGAATTACTCGATTGGTCAAAGCGTTTCGACATTATATGTGGAATTGCTAGGGGACTTGTCTATCTTCATCAGGATTCGAGACTGAGGATTATTCACAGAGATCTAAAATTGAGTAATGTTTTACAAGATAAGGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCGGAGGAGATCAAAATGAAGGAAAAACAAGGAGAATAGTTGGAACATATGGTTACATGGCACCAGAATATGCTACCAATGGCTTATTTTCAGTGAAGTCAGATGTCTTCAGCTTCGGTGTTTTATTGATGGAGATTATATCGGGGAAGAGAAGTAGAGGATACTACAATCAAAACCAAAGCCACAATCTCATAGGCTATGCATGGAAACTTTGGAAAGAAGGAAAACCACTAAAATTGATTGATAAAAACATAGGAGACTCTTGTTTTATATCACAAATATTGCATTCTATTCATGTTAGTCTCTTATGTGTTCAACAAAATCCAGAGGATAGGCCAATAATGTCAAGTGTGATTCTAATGTTGGTAAGTGATTTTAAATTGCCTGAACCAAAACAGCCAGGATTCTTTTTCAAAGATTCAAGTGGAGGAGAGTCCTCCACAAGTAACCAACTGCTAAGTTCTACAAATGAAATAACCATTACATTATTGGAGGCTAGATGA 2379 0.3602 MSLIIMSIIFYAYHILIYFSQISLALNTISQSISLTDDGNTLVSKGGIYELGFFTPGNSNKRYLGIWYKNIPIQTVVWVANRINPINDSSGTLTLNNITGNLVLTQKNNETVVWSTTSNSLRKKSVVAILLDTGNLVLIDEKEENKESNFLWQSFDYPTDTFLPEMKFGLDFKTGLNRRLTAWKSPDDPSPSDFSYGMVPHNYPDAYMMKGDKKFYRSGPWNGLRSSGSPQIRPNPIYDYRFVYNKDEFYYTYSLKNSSAVTRLVLNATASIRYRYVWIESAKRWEIYTSVPLDLCDSYALCGAYSSCVISNSPVCQCMKGFKPKSPQAWYAMDWSNGCVRNKALRCEEKNKDGFVKLSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELEHVNEGHKKKGVIVAVIVSLAMAILCGILLLGWCYGHKSSTYVKDFIIKEDHQNSGMQVDDGDLPVFNLSTIAKATNNFTIINKIGEGGFGPVYKGILSDGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNSSLDSFIFDKQKSELLDWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKLSNVLQDKEMNPKISDFGMARIFGGDQNEGKTRRIVGTYGYMAPEYATNGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLIGYAWKLWKEGKPLKLIDKNIGDSCFISQILHSIHVSLLCVQQNPEDRPIMSSVILMLVSDFKLPEPKQPGFFFKDSSGGESSTSNQLLSSTNEITITLLEAR 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03301 792 Pfam D-mannose binding lectin 75 184 IPR001480 -
Trre12g03301 792 Gene3D - 21 155 IPR036426 -
Trre12g03301 792 SMART blect_4 33 158 IPR001480 -
Trre12g03301 792 Pfam Domain of unknown function (DUF3403) 752 792 IPR021820 GO:0004674
Trre12g03301 792 CDD B_lectin 38 158 IPR001480 -
Trre12g03301 792 SUPERFAMILY Protein kinase-like (PK-like) 458 747 IPR011009 -
Trre12g03301 792 Gene3D Transferase(Phosphotransferase) domain 1 552 753 - -
Trre12g03301 792 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Trre12g03301 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 552 755 - -
Trre12g03301 792 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Trre12g03301 792 CDD STKc_IRAK 482 747 - -
Trre12g03301 792 Gene3D Phosphorylase Kinase; domain 1 427 551 - -
Trre12g03301 792 ProSiteProfiles Protein kinase domain profile. 476 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03301 792 SMART serkin_6 476 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03301 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 155 - -
Trre12g03301 792 PIRSF SRK 359 792 IPR024171 GO:0004674
Trre12g03301 792 PIRSF SRK 1 364 IPR024171 GO:0004674
Trre12g03301 792 Pfam Protein tyrosine and serine/threonine kinase 477 744 IPR001245 GO:0004672|GO:0006468
Trre12g03301 792 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 359 737 - -
Trre12g03301 792 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 440 551 - -
Trre12g03301 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 189 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03301 Trre-Chr12 48339005 48342532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03301 383 762 Receptor kinase-like Gene Family AT4G23190 50.781 1.93e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g03301 PK_Tyr_Ser-Thr 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03301 - - qsu:112015727 959.518