Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03300 ATGTCTTTAATCATAATGAGTATAATTTTCTATGCTTATCATATACTTATATATTTTTCTCAAATTTCTCTAGCACTTAACACAATATCTCAATCCATTTCCTTAACAGATGATGGAAACACATTAGTTTCCAAAGGTGGAATCTATGAACTTGGATTCTTCACACCAGGAAATTCCAACAAACGTTACCTTGGAATTTGGTACAAGAATATTCCAATTCAAACTGTTGTTTGGGTTGCAAATAGAATCAATCCAATCAATGATTCATCTGGAACATTAACATTAAACAACATCACTGGAAACCTTGTCCTCACTCAGAAGAATAATGAAACTGTTGTTTGGTCTACAACATCGAATTCTCTTCGAAAAAAGTCAGTAGTAGCAATTCTTTTAGATACCGGAAATCTTGTGTTAATCGACGAGAAAGAAGAAAACAAAGAATCTAATTTCTTGTGGCAGAGTTTTGATTATCCTACTGACACTTTCTTACCAGAAATGAAGTTTGGTTTGGACTTCAAAACCGGTCTTAATCGGCGTTTAACTGCTTGGAAAAGTCCCGATGATCCATCACCGAGCGATTTTTCTTACGGTATGGTTCCTCATAACTATCCTGATGCATATATGATGAAAGGTGATAAAAAATTCTACAGAAGTGGACCATGGAATGGTTTACGTTCAAGTGGTTCGCCACAAATTAGGCCGAATCCAATTTATGATTACAGGTTTGTTTATAATAAAGATGAATTTTACTACACTTATAGCCTAAAAAACTCGTCTGCTGTTACGCGATTAGTATTAAATGCAACTGCGTCCATTCGTTACCGTTATGTGTGGATTGAATCGGCGAAAAGATGGGAAATCTACACGTCGGTACCATTGGATTTATGTGATAGTTATGCCCTTTGTGGAGCCTATTCAAGTTGTGTTATATCTAATTCACCTGTGTGTCAATGTATGAAAGGTTTTAAACCTAAGTCGCCACAAGCGTGGTATGCAATGGATTGGTCTAATGGATGTGTCCGAAATAAGGCGTTGCGTTGCGAGGAAAAAAACAAGGATGGATTTGTCAAGTTAAGTGGTATGAAAGGGCCTGACACTACATATAGTTGGTTGGATCAAACAATTGGTTTGAAGGAATGTAGAGTGAAGTGTTTGAATAATTGTTCTTGTATGGCATATGCAAATTCAGATGTAAGAGGTGAAGGGAGTGGTTGTGCTTTGTGGTTTGGTGATTTAATTGATATTAGACAATTTGCAGCTGGAGGGCAAGATTTGTATGTTAGAATGGATTCTTCAGAATTAGAACATGTCAATGAGGGTCACAAGAAGAAAGGAGTTATAGTGGCAGTAATAGTTTCTCTTGCAATGGCAATACTTTGTGGTATACTCTTACTTGGTTGGTGTTATGGACATAAATCAAGCACTTATGTAAAAGATTTCATTATCAAAGAAGATCATCAAAACAGTGGGATGCAGGTGGATGATGGAGACTTACCAGTCTTTAATTTATCAACAATAGCAAAAGCCACTAACAACTTTACAATCATTAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATTCTATCTGATGGAGTGGAAATTGCTGTGAAAAGACTTTCAACAAGCTCGGGCCAAGGATTGAATGAGTTTAAAAATGAAGTAAAATTGATTGCGAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGTTGCCTTGAAGGAGAAGAAAAAATGTTGGTTTATGAATACATGCCTAATAGTAGCTTGGACTCCTTTATATTTGATAAGCAGAAAAGTGAATTACTCGATTGGTCAAAGCGTTTCGACATTATATGTGGAATTGCTAGGGGACTTGTCTATCTTCATCAGGATTCGAGACTGAGGATTATTCACAGAGATCTAAAATTGAGTAATGTTTTACAAGATAAGGAAATGAATCCCAAAATTTCAGATTTTGGCATGGCTAGAATTTTCGGAGGAGATCAAAATGAAGGAAAAACAAGGAGAATAGTTGGAACATATGGTTACATGGCACCAGAATATGCTACCAATGGCTTATTTTCAGTGAAGTCAGATGTCTTCAGCTTCGGTGTTTTATTGATGGAGATTATATCGGGGAAGAGAAGTAGAGGATACTACAATCAAAACCAAAGCCACAATCTCATAGGCTATGCATGGAAACTTTGGAAAGAAGGAAAACCACTAAAATTGATTGATAAAAACATAGGAGACTCTTGTTTTATATCACAAATATTGCATTCTATTCATGTTAGTCTCTTATGTGTTCAACAAAATCCAGAGGATAGGCCAATAATGTCAAGTGTGATTCTAATGTTGGTAAGTGATTTTAAATTGCCTGAACCAAAACAGCCAGGATTCTTTTTCAAAGATTCAAGTGGAGGAGAGTCCTCCACAAGTAACCAACTGCTAAGTTCTACAAATGAAATAACCATTACATTATTGGAGGCTAGATGA 2490 0.3602 MSLIIMSIIFYAYHILIYFSQISLALNTISQSISLTDDGNTLVSKGGIYELGFFTPGNSNKRYLGIWYKNIPIQTVVWVANRINPINDSSGTLTLNNITGNLVLTQKNNETVVWSTTSNSLRKKSVVAILLDTGNLVLIDEKEENKESNFLWQSFDYPTDTFLPEMKFGLDFKTGLNRRLTAWKSPDDPSPSDFSYGMVPHNYPDAYMMKGDKKFYRSGPWNGLRSSGSPQIRPNPIYDYRFVYNKDEFYYTYSLKNSSAVTRLVLNATASIRYRYVWIESAKRWEIYTSVPLDLCDSYALCGAYSSCVISNSPVCQCMKGFKPKSPQAWYAMDWSNGCVRNKALRCEEKNKDGFVKLSGMKGPDTTYSWLDQTIGLKECRVKCLNNCSCMAYANSDVRGEGSGCALWFGDLIDIRQFAAGGQDLYVRMDSSELEHVNEGHKKKGVIVAVIVSLAMAILCGILLLGWCYGHKSSTYVKDFIIKEDHQNSGMQVDDGDLPVFNLSTIAKATNNFTIINKIGEGGFGPVYKGILSDGVEIAVKRLSTSSGQGLNEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMPNSSLDSFIFDKQKSELLDWSKRFDIICGIARGLVYLHQDSRLRIIHRDLKLSNVLQDKEMNPKISDFGMARIFGGDQNEGKTRRIVGTYGYMAPEYATNGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNQSHNLIGYAWKLWKEGKPLKLIDKNIGDSCFISQILHSIHVSLLCVQQNPEDRPIMSSVILMLVSDFKLPEPKQPGFFFKDSSGGESSTSNQLLSSTNEITITLLEAR 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03300 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 429 - -
Trre12g03300 829 SMART blect_4 33 158 IPR001480 -
Trre12g03300 829 Pfam Domain of unknown function (DUF3403) 789 829 IPR021820 GO:0004674
Trre12g03300 829 CDD B_lectin 38 158 IPR001480 -
Trre12g03300 829 Gene3D Transferase(Phosphotransferase) domain 1 589 790 - -
Trre12g03300 829 SMART ntp_6 350 429 IPR003609 -
Trre12g03300 829 SMART serkin_6 513 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03300 829 SUPERFAMILY Protein kinase-like (PK-like) 495 784 IPR011009 -
Trre12g03300 829 ProSiteProfiles Protein kinase domain profile. 513 798 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03300 829 ProSiteProfiles Bulb-type lectin domain profile. 26 151 IPR001480 -
Trre12g03300 829 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Trre12g03300 829 Gene3D Phosphorylase Kinase; domain 1 464 588 - -
Trre12g03300 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 22 155 - -
Trre12g03300 829 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Trre12g03300 829 Pfam PAN-like domain 347 415 IPR003609 -
Trre12g03300 829 PIRSF SRK 1 829 IPR024171 GO:0004674
Trre12g03300 829 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 16 774 - -
Trre12g03300 829 Pfam D-mannose binding lectin 75 184 IPR001480 -
Trre12g03300 829 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 189 IPR036426 -
Trre12g03300 829 Gene3D - 21 155 IPR036426 -
Trre12g03300 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 477 588 - -
Trre12g03300 829 CDD PAN_AP_plant 345 428 - -
Trre12g03300 829 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 589 792 - -
Trre12g03300 829 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Trre12g03300 829 CDD STKc_IRAK 519 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03300 Trre-Chr12 48339005 48342532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03300 445 799 Receptor kinase-like Gene Family AT4G23190 52.646 3.55e-128 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g03300 PK_Tyr_Ser-Thr 6.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03300 - - gmx:100778155 1281.93