Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03291 ATGAATGGAAAGCTTCAAGGACAATCTCTCAAAAATAATGAGACACTAATCTCAAAAAGTGGAATTTTTGAAGCTGGTTTCTTCAACTTTGGAGATTCAAATAACCAATATTTTGGTATAAGGTACAAAGATATTTCACCACAAACTATTGTGTGGATAGCAAATAGAGATGATCCATTAGGAAGCTCATCAGGAACTTTGAATGTCACAGATAAAGGAACTCTTATTGTTCTTGATTCAAAAGGGTCTATGATATGGTCTTCTGATTCCTCAAAAACAGTAACAAATGTTACAAAACCAATTGTTCAAATCTTGGATAGTGGAAACCTTATTGTGAAAGATGAAACCAACCCAGATAATATTTTGTGGCAAAGTTTTGATATTCCTGGTGATACTTTACTACCTGGTATGAAAATTAGAAGCAGTTTAGTAAATGGTGATAAAAAAGGTTTGGTTTCGTGGCGAGATACACAAGATCCTACTACTGGTTTGTATTCGTATCGTATAGATACTAGTGGTTTACCTCAAGTAGCGATTGTACAAGGAAACTCATTTTATGTCAGAATAGGATCATGGAATGGAAATATGTTAGCCGGAATTCCTTCAACGATACTTTACGATTCGTTTAATTTTACATTAGTGACTACTGATAAGGAAGTTTCTTATGGATATGAACTTTTGGACAAGTCAATTGTTTCAAGATACATGCTCACTTCATCCGGTCAAATAGCGCGTTACATATTGGACGCGCAGACAAAGAATTGGAGTCTTACATTTCTTGGCCCTTCGGATAGTTGTGATCATTATGATATCTGTGGTGCAAATTCTAATTGTGATCCTACTAACTCACAATCAACATTATGTGACTGTCTTGAAGGTTTCATTCCAAAGTCTCGAGAAAGGTGGGATTCGCAAAAATGGTCGGATGGTTGTATTAGGAGAGTTAAGTTAGATTGTGACAACAGGGATAGATTTTATAAGATTGCGGGAACGAAGTTGCCAGATACATCAAAATCTTGGTTTAATAAGAGCATGAACATTGAGGAATGTGAGAGTTTCTGTAAGAGAAACTGTTCTTGCACTGCATATGCAAATTTAGATGTCAGAAATGGTGGAAGTGGTTGCTTACTTTGGTTTAATAACATTATGGATGTCAAAAAACTAAGCTCTGGAGGACAAGACATTTACATCAGAATTGCAGCTTCAGAACTAGACCATAAAAAACACATGACCAAGAAGCTAGCTGGAATTCTAGTAGGCTTAATTTTGTTTATTGTGATCATGATAACTCTTGGAGTCTGCATATATCGGAATCGGAGGAAGAAACTAGAGAATCCAGGGTTGATTCAAGTATTTAGCTTCAAGAACCAAACTGACAGCAAAGAAAATGAAGATATTGACATACCAATATATGATCTATCAACCATAGCTAATGCAACCAATAACTTTTCCATTGATAACAAATTGGGGCAAGGAGGATTTGGACCAGTTTACAAGGGTAAATTGGAAAATGAACAAGATATAGCTGTGAAGAGGCTTTGCAACACTTCAGCACAAGGACCAAAAGAGTTCATAAATGAAGTTAAGCTAATAGCAAATCTTCAGCACCGAAATCTTGTGAAACTACTTGGCTGTTGCATTCATCATGATGAGAGACTCTTGATATATGAATTCATGATCAACAGAAGCTTGGACTACTTCATTTTTGATCAAACTAGAAAACAATTACTGGGTTGGCCTCGACGATTTCAAATTATTTGTGGGATTGCTCGAGGACTTCTTTATCTTCATGAAGATTCTAGATTAAGGATTATCCACAGAGATCTCAAGACCAGCAATATTCTTCTAGACCAAAATATGAATCCTAAAATATCAGACTTTGGTCTTGCTAGAACATTATGGGGAGATGAAGCAGAAGTGGAAACAAATAAAGTAGTAGGAACTCATGGTTACATATCTCCAGAGTATGCAGCACGTGGATTTTTCTCAGTGAAATCTGATGTCTTTAGTTTTGGCGTTATTATACTAGAGATAATAAGTGGAAAAAAGAACAGGGAATATAGTGACTATCATAATCTTGACCTTCTTGGACATGCATGGAGAATGTGGTGTGAAACAACGCCGTTGAACCTGTTAGACGAATCTCTAGGCGAATCGGCTGTTGTAGCTGAAGCTGAGATATTGAGATGTATTCAAATAGGGCTTTTATGTGTGCAAGAGAGACCTGATGACAGGCCAGACATGTCAGCTGCAGTTCTAATGCTGAATGGTGAAAAAGCATTGCCTAAGCCAAAGGAACCAGCATTTTATCCACACCAATTAGGATCTTCATCAGGAACTACTGTACTGCATTCAAATAATGAAGTTTCCATAACATTGTTAGATGCAAGATAG 2394 0.3655 MNGKLQGQSLKNNETLISKSGIFEAGFFNFGDSNNQYFGIRYKDISPQTIVWIANRDDPLGSSSGTLNVTDKGTLIVLDSKGSMIWSSDSSKTVTNVTKPIVQILDSGNLIVKDETNPDNILWQSFDIPGDTLLPGMKIRSSLVNGDKKGLVSWRDTQDPTTGLYSYRIDTSGLPQVAIVQGNSFYVRIGSWNGNMLAGIPSTILYDSFNFTLVTTDKEVSYGYELLDKSIVSRYMLTSSGQIARYILDAQTKNWSLTFLGPSDSCDHYDICGANSNCDPTNSQSTLCDCLEGFIPKSRERWDSQKWSDGCIRRVKLDCDNRDRFYKIAGTKLPDTSKSWFNKSMNIEECESFCKRNCSCTAYANLDVRNGGSGCLLWFNNIMDVKKLSSGGQDIYIRIAASELDHKKHMTKKLAGILVGLILFIVIMITLGVCIYRNRRKKLENPGLIQVFSFKNQTDSKENEDIDIPIYDLSTIANATNNFSIDNKLGQGGFGPVYKGKLENEQDIAVKRLCNTSAQGPKEFINEVKLIANLQHRNLVKLLGCCIHHDERLLIYEFMINRSLDYFIFDQTRKQLLGWPRRFQIICGIARGLLYLHEDSRLRIIHRDLKTSNILLDQNMNPKISDFGLARTLWGDEAEVETNKVVGTHGYISPEYAARGFFSVKSDVFSFGVIILEIISGKKNREYSDYHNLDLLGHAWRMWCETTPLNLLDESLGESAVVAEAEILRCIQIGLLCVQERPDDRPDMSAAVLMLNGEKALPKPKEPAFYPHQLGSSSGTTVLHSNNEVSITLLDAR 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03291 797 PIRSF SRK 2 797 IPR024171 GO:0004674
Trre12g03291 797 Gene3D Phosphorylase Kinase; domain 1 456 558 - -
Trre12g03291 797 CDD PAN_AP_plant 315 400 - -
Trre12g03291 797 CDD STKc_IRAK 489 757 - -
Trre12g03291 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 318 399 - -
Trre12g03291 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 559 763 - -
Trre12g03291 797 Pfam PAN-like domain 319 385 IPR003609 -
Trre12g03291 797 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 742 - -
Trre12g03291 797 ProSiteProfiles Bulb-type lectin domain profile. 1 125 IPR001480 -
Trre12g03291 797 Gene3D Transferase(Phosphotransferase) domain 1 559 765 - -
Trre12g03291 797 Pfam S-locus glycoprotein domain 188 298 IPR000858 GO:0048544
Trre12g03291 797 Gene3D - 5 126 IPR036426 -
Trre12g03291 797 ProSiteProfiles PAN/Apple domain profile. 319 400 IPR003609 -
Trre12g03291 797 ProSitePatterns Serine/Threonine protein kinases active-site signature. 604 616 IPR008271 GO:0004672|GO:0006468
Trre12g03291 797 ProSiteProfiles Protein kinase domain profile. 483 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03291 797 CDD B_lectin 8 129 IPR001480 -
Trre12g03291 797 SMART blect_4 7 129 IPR001480 -
Trre12g03291 797 SUPERFAMILY Protein kinase-like (PK-like) 468 782 IPR011009 -
Trre12g03291 797 Pfam D-mannose binding lectin 49 155 IPR001480 -
Trre12g03291 797 Pfam Protein tyrosine and serine/threonine kinase 484 696 IPR001245 GO:0004672|GO:0006468
Trre12g03291 797 SUPERFAMILY alpha-D-mannose-specific plant lectins 50 160 IPR036426 -
Trre12g03291 797 SMART serkin_6 483 753 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03291 797 Gene3D Hepatocyte Growth Factor 316 397 - -
Trre12g03291 797 SMART ntp_6 320 399 IPR003609 -
Trre12g03291 797 FunFam Receptor-like serine/threonine-protein kinase SD1-8 4 126 - -
Trre12g03291 797 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 449 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03291 Trre-Chr12 48235072 48239692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03291 414 772 Receptor kinase-like Gene Family AT4G23190 49.457 6.53e-116 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g03291 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03291 - - ccaj:109805721 1127.46