Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03290 ATGGAAAGCTTCAAGATGCTACTAGTTTGTAGCTTTCTTATCTTCAACTTCATACCAACCTTCAACACCTTAGAAACCATTTTTCAAGGACAATCACTAAAACAAAATGAGACACTTATCTCAAAAAATGGAACATTTGAAGCTGGTTTTTTCAACTTTGGAGATTCAAATATTCAATATTTTGGTGTATGGTACAAAGATATTTCACCAAAAACACTTGTTTGGATAGCAAATAGAGATTCTCCATTAGGAAACTCATTAGGAGCTTTGAATTTCACTGATAAAGGAAATCTTATTCTTCTTGATTCCAAAGGGTCTATGATATGGTCCTCTATTTCATCAAAAACAGTAACAAAAGTTACAAAACCAATTCTTCAACTATTGGAAAATGGAAACCTTATTGTGAAAGATGAAACCAACCCAGATGATATTTTTTGGCAAAGTTTTGATCTTCCTAGTGATACTTTACTTCCAGGTATGAGACTTCGAACCGATTTAGTAACCGGTAATTATACCGGTTTGGTTTCTTGGACTGATACAGAAAATCCTGCTACTGGTTTATATTCATATCATATAGATGCTAATGGTTATCCTCAAGTAGTGATCACCAAAGGTAACAAATTATTGTATAGAGTTGGTTCATGGAATGGAAATATGTTATCTGGAGTTGCTTCGGCGACGCTTTACAAAGCCTATAATTTTTCATTTGTGATTACTGATAAAGAAGTTTCTTATGGATATGATCTTTTAGATAATTCAGATGTTTCGAGGTATATCTTAACTTCAACCGGGCAAATATCGCGTTATATTTTGTCGGATCAGACAAAAAGTTGGCAAATTTTCTTTGTTGGTCCTACCGATCAATGTGATAATTATGCTCTATGTGGCGCAAATTCTAATTGTGATGATGCTAACTCACCGTTAGTATGTGATTGTCTTGATGGTTTCGTTCCAAAATCGCAAGAAAAATGGAATTCGCAAAATTGGCTTGATGGTTGTGTTAGGAAAGTGAAATTAGATTGTGATAATAACAGTGATGGTTTTTTGAAGCATGAAGGAATGAAGTTGCCAGATACGTCGAAATCTTGGTTTAATAAGAGCATGAACCTTGAACAATGTGAGAGATTCTGTTTGAGTAATTGTTCTTGTACAGCTTATGCAAATTTAGATATCAGAAATGGCGGAAGCGGTTGCTTGATTTGGCTTAATAACATTTTGGATGTTCGAAAACTAAGCTCTGGAGGACAAGACCTTTACATAAGAGTCGCAGCTTCAGAATTAGACCATAACTCAGGCTCGAACAAGAAGAAGCTCGCTGGAATTCTAGTCGGATGTATTGTGTTTATTGCGATCATGACAGTACTAGGATACTCCATTCATCGCATTCGGAGAAAGAAACTAGAAAAACCAGGGGATAATCAAGTATTTAGCTTGAATAATCATACCGACAACAAAGAGAATGACGATATTGACATACCGATATTTGATTTATCAACGATTGCTAATGCAACTAATAACTTCTGCATTGATAACAAATTGGGACAAGGAGGATTTGGACCAGTTTACAAGGGTAAATTGGAAAATGGACAAGATATAGCTGTGAAGAGGCTTTGCAATACTTCAGGACAAGGATCAAAAGAGTTCATAAATGAAGTTAAGTTAATTGCAAATCTTCAGCACAGAAATCTTGTGAAACTACTTGGCTGTTGCATTCAAAATAATGAGAAACTCTTGATATATGAATTCATGATCAATAGAAGCTTGGACTACTTCATTTTTGATGAAACTAGAAAAAGTTTACTACATTGGACTCAACGATTCCAAATAATATGTGGAATTGCTCGAGGACTTCTTTATCTTCACGAAGATTCTAGATTAAGGATTATACACAGAGATCTCAAGACCAGCAATATTCTTCTAGACGAAAATATGAATCCAAAAATATCAGACTTTGGTCTCGCTAGAACATTATGGGGAGATGAAGGTGAAGGCGAAACAAAAAGAGTAGTAGGAACTTATGGTTACATATCTCCAGAGTTCGCAATACGTGGATTTTTTTCAGTGAAATCTGATGTCTTTAGTTTCGGCGTTATTATACTAGAGACAATTAGTGGAAAAAAGAACAGAGATTATTGTGACTATGACGATCTTGACCTTCTTGGATATGCATGGAGGATGTGGTCGGAACAAACACCATTTGAGCTAATAGACAAAACTCTACGCGATTCATTTGTTGAAACCGAAGCTGAAATATCGAGATGTATTCAGATAGGACTTTTATGTGTTCAAGAGAGAGCTGATGATAGGCCAGATATGTCAGCTGCAGTTCTAATGCTGAATGGTGAAAAATCATTGCCTAATCCAAAGGAACCAGCCTTTTATCCACATCAATTAGGATCTTCATCAGGAACTAGTAAGCTGCATTCAAATGATGAGGTGCATTCAAATAATGAAGTTTCAATGACATTGTTACAAGCAAGATAG 2484 0.3539 MESFKMLLVCSFLIFNFIPTFNTLETIFQGQSLKQNETLISKNGTFEAGFFNFGDSNIQYFGVWYKDISPKTLVWIANRDSPLGNSLGALNFTDKGNLILLDSKGSMIWSSISSKTVTKVTKPILQLLENGNLIVKDETNPDDIFWQSFDLPSDTLLPGMRLRTDLVTGNYTGLVSWTDTENPATGLYSYHIDANGYPQVVITKGNKLLYRVGSWNGNMLSGVASATLYKAYNFSFVITDKEVSYGYDLLDNSDVSRYILTSTGQISRYILSDQTKSWQIFFVGPTDQCDNYALCGANSNCDDANSPLVCDCLDGFVPKSQEKWNSQNWLDGCVRKVKLDCDNNSDGFLKHEGMKLPDTSKSWFNKSMNLEQCERFCLSNCSCTAYANLDIRNGGSGCLIWLNNILDVRKLSSGGQDLYIRVAASELDHNSGSNKKKLAGILVGCIVFIAIMTVLGYSIHRIRRKKLEKPGDNQVFSLNNHTDNKENDDIDIPIFDLSTIANATNNFCIDNKLGQGGFGPVYKGKLENGQDIAVKRLCNTSGQGSKEFINEVKLIANLQHRNLVKLLGCCIQNNEKLLIYEFMINRSLDYFIFDETRKSLLHWTQRFQIICGIARGLLYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTLWGDEGEGETKRVVGTYGYISPEFAIRGFFSVKSDVFSFGVIILETISGKKNRDYCDYDDLDLLGYAWRMWSEQTPFELIDKTLRDSFVETEAEISRCIQIGLLCVQERADDRPDMSAAVLMLNGEKSLPNPKEPAFYPHQLGSSSGTSKLHSNDEVHSNNEVSMTLLQAR 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03290 827 Gene3D Phosphorylase Kinase; domain 1 480 582 - -
Trre12g03290 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 583 787 - -
Trre12g03290 827 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 217 IPR036426 -
Trre12g03290 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 340 422 - -
Trre12g03290 827 ProSiteProfiles PAN/Apple domain profile. 341 423 IPR003609 -
Trre12g03290 827 Pfam PAN-like domain 341 408 IPR003609 -
Trre12g03290 827 Pfam S-locus glycoprotein domain 210 320 IPR000858 GO:0048544
Trre12g03290 827 SUPERFAMILY Protein kinase-like (PK-like) 490 797 IPR011009 -
Trre12g03290 827 PIRSF SRK 1 827 IPR024171 GO:0004674
Trre12g03290 827 ProSiteProfiles Protein kinase domain profile. 507 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03290 827 FunFam Receptor-like serine/threonine-protein kinase SD1-8 20 149 - -
Trre12g03290 827 Pfam D-mannose binding lectin 72 177 IPR001480 -
Trre12g03290 827 Gene3D Hepatocyte Growth Factor 341 420 - -
Trre12g03290 827 Gene3D Transferase(Phosphotransferase) domain 1 583 789 - -
Trre12g03290 827 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Trre12g03290 827 SMART ntp_6 343 422 IPR003609 -
Trre12g03290 827 SMART serkin_6 507 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03290 827 MobiDBLite consensus disorder prediction 797 827 - -
Trre12g03290 827 CDD PAN_AP_plant 337 423 - -
Trre12g03290 827 CDD B_lectin 31 152 IPR001480 -
Trre12g03290 827 Gene3D - 21 149 IPR036426 -
Trre12g03290 827 Pfam Protein tyrosine and serine/threonine kinase 509 776 IPR001245 GO:0004672|GO:0006468
Trre12g03290 827 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 473 582 - -
Trre12g03290 827 CDD STKc_IRAK 513 781 - -
Trre12g03290 827 MobiDBLite consensus disorder prediction 787 827 - -
Trre12g03290 827 SMART blect_4 30 152 IPR001480 -
Trre12g03290 827 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Trre12g03290 827 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 8 769 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03290 Trre-Chr12 48227385 48231168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03290 438 796 Receptor kinase-like Gene Family AT4G23190 50.136 2.31e-119 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre12g03290 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03290 - - ccaj:109805721 1192.56