Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03272 ATGGCTTCCAAATTCAAAGTTCCAACAGTGGCTCCAAAACCAAATTTTCCAAATTGTGAGAAGTGTACGGAAATCATCCAGTACTACTTCAACATCGACGACATGGCCCGACATAAGCTCTACAAAGACGATCGGAAAGTTCTCCTCCGCCAGCATGCTGTTTCAGTGATCGCTAAGGTTGGCGTCAGAGAGAAGGGTATTCCAACTACATTTGTTCCGTATCTTGCTATGAACTACTTTGATCGCTTCTTATCCCATTACGATATGAAGCTTGTGGAAGGTCGGACGGCTATCGAAAAAGTTCGTTTGATTGCTATATCTTGTTTCACCTTATCTTGCTCTTTAAAATCACCCATGTTCCATATTGAACGGTTTTTGACTTTCCATAAGACTCATGAATATGATCACAACGGCATGGATCTTAACTGGATTACTTATGACATGGTAATGACAATGCGGCGTAACATTATGGACAAACTTAAGAGAATGAAACCTGTAACTGCCTTCTGGTTTCTGGACCATTTTTATGCTCACTTCGTACCACTAGGTTTAAAACGCCGTAGCATTAATGAGATCATAGTTCAAGCTCAAGGAGAGCACACCTTTGTTGATTTCATGCCTTCAGACATTGCGTTCTCCGCTTGTGTGGCTGCTGCCACAATTGCATGTCCCTTAAAGGAACTTCCAGAAGACATTAATAATATCATTAACAACAATATGCTTGGCTATAAACTGAAGGAATGTCTGGAGAAGATGATAGAATTTTGCCGTAGAATGAACATCCTGATTGAGGTAGCAGCAGAAGAGATTGAGGCAGAAAAACAAAGTCCGGCCAAGGGTGAGGGCAAAGGAAAGGAAGTGAAAAAGGTTGAGGGGCCACAGCCACAGATGGAACGAGGCATTTCATGGATTGAACCAAGAGAAGAAGACATGCTCTTTGAGCTGAAGTGGGCCACTGATGTTCCACCACTAGAAGAAGAAGATGTGCAGCCACAAGAGTCTACAGCTATAAGCCTTAGGATACCAGGGACCAAGGTTTTAAATAGCGGTCGCGGGACTGCAAAGAATATAAATATAGGCTGCTGTACCTGCAACATCAGTTAG 1104 0.4266 MASKFKVPTVAPKPNFPNCEKCTEIIQYYFNIDDMARHKLYKDDRKVLLRQHAVSVIAKVGVREKGIPTTFVPYLAMNYFDRFLSHYDMKLVEGRTAIEKVRLIAISCFTLSCSLKSPMFHIERFLTFHKTHEYDHNGMDLNWITYDMVMTMRRNIMDKLKRMKPVTAFWFLDHFYAHFVPLGLKRRSINEIIVQAQGEHTFVDFMPSDIAFSACVAAATIACPLKELPEDINNIINNNMLGYKLKECLEKMIEFCRRMNILIEVAAEEIEAEKQSPAKGEGKGKEVKKVEGPQPQMERGISWIEPREEDMLFELKWATDVPPLEEEDVQPQESTAISLRIPGTKVLNSGRGTAKNINIGCCTCNIS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03272 367 SUPERFAMILY Cyclin-like 37 161 IPR036915 -
Trre12g03272 367 MobiDBLite consensus disorder prediction 273 295 - -
Trre12g03272 367 PANTHER CYCLINS 50 254 IPR039361 -
Trre12g03272 367 Gene3D - 165 251 - -
Trre12g03272 367 MobiDBLite consensus disorder prediction 273 293 - -
Trre12g03272 367 Gene3D - 49 164 - -
Trre12g03272 367 Pfam Cyclin, N-terminal domain 46 161 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03272 Trre-Chr12 47858558 47861224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03272 50 226 Core Cell Cycle Gene Families AT4G03270 31.053 3.10e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03272 K18812 - tpra:123896490 240.736