Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03270 ATGTATTCCGAACCAGAATTTCCAATTCCAAGTAGGAAGGATTTGGAAACCATCAAGTACTACTTCGACAACGAAACAGAGTTCATGGCTGCAACAAACTTCTTCAACGACGATCGGAACATTCTTATTCGCAGAAATGCCGTTTCAATAATCGCTAAGGTGACAAAGAAGATTGATCCAGATGCATTTGTTCCGTATCGTGCTATGAACTACTTTGATCGCTTCTTATCCCGTTACAACATGACGGATGTGGAAGGTCGGACTGATACCGAAAAAGTTAATTTGATTGCTATATCTTGTTTCACCATATCTGCCAAGATGTGGATAGACTCATTCTCGGTTGACCAGTTTTTGTCTGACCTAAATAGGGACATGAATCTGAGGATAAGTCATGACATGGTAATGAGAATGGAGTTTCTCATTCTACAAGTACTTAGCTGGAAAATGAAATCTGTGACTGCCTTCTGTTTTCTGAACCACTATTACCCTCACTTCAGACAATTCCGTGGTTTTAAACGCCGTAGCATTAATGAGATCATAGTTCAAGCACAAGGAGAGCACACCTTTGTTGACTTCATGCCTTCACACATTGCATTCTCCGCTTTTCTGGCTGCTGCCAAAATTGCATATCCCTTAAAGTATATGGAAATTGCAGAAGACATTGAAAGCAAACTTAACGATCAAGTGAAGGAATGTGCAGAGAAGATGATAGATCTTTGCAGAAGGCTGAACATCCTGATTGATACCCCTAGATCAGGAATTCACTCTGCTTCAAGTGAAGCCGTGGCAGTACCCCAAAAGGAAACCAAAGATAAAGCGGTGGTGGTCGATGATTCATCCGAAGAAGAAGAAGGGACTGCGTTAATCGACAAGCGAAGACAGGACATAGGCAAGATGGAGACTTCTCAATTGCAGGTGCAGGAGGGGCCGGAGAAGTTATCCAATAAAAAAGATGTATCAGCAGAAGAGACTAAGGTATCCATTTCAGAGATTGAAGAGGACCTTGTAGAACCAAAGAAGCTAATGAACTTTGAGCTGAAGTGGGCCACTGATGTTCCACCACTAGAAGCGCAGCCACAAGAGTCTATAACTATAAGCTTTAGGATACCAGGGACCGGAAAGAATATAAATTTAGGCTGTTGTACCTGCAACATCAGTTAG 1161 0.4195 MYSEPEFPIPSRKDLETIKYYFDNETEFMAATNFFNDDRNILIRRNAVSIIAKVTKKIDPDAFVPYRAMNYFDRFLSRYNMTDVEGRTDTEKVNLIAISCFTISAKMWIDSFSVDQFLSDLNRDMNLRISHDMVMRMEFLILQVLSWKMKSVTAFCFLNHYYPHFRQFRGFKRRSINEIIVQAQGEHTFVDFMPSHIAFSAFLAAAKIAYPLKYMEIAEDIESKLNDQVKECAEKMIDLCRRLNILIDTPRSGIHSASSEAVAVPQKETKDKAVVVDDSSEEEEGTALIDKRRQDIGKMETSQLQVQEGPEKLSNKKDVSAEETKVSISEIEEDLVEPKKLMNFELKWATDVPPLEAQPQESITISFRIPGTGKNINLGCCTCNIS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03270 386 SUPERFAMILY Cyclin-like 131 245 IPR036915 -
Trre12g03270 386 Pfam Cyclin, N-terminal domain 17 149 IPR006671 -
Trre12g03270 386 PANTHER CYCLINS 19 251 IPR039361 -
Trre12g03270 386 MobiDBLite consensus disorder prediction 265 298 - -
Trre12g03270 386 Gene3D - 23 236 - -
Trre12g03270 386 SUPERFAMILY Cyclin-like 14 149 IPR036915 -
Trre12g03270 386 Gene3D - 31 150 - -
Trre12g03270 386 MobiDBLite consensus disorder prediction 257 320 - -
Trre12g03270 386 Pfam Cyclin, C-terminal domain 152 241 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03270 Trre-Chr12 47851028 47853418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03270 14 214 Core Cell Cycle Gene Families AT4G03270 31.455 1.79e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03270 - K18812 tpra:123896490 600.512