Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03268 ATGGCTTCCGATGTAGAGTTCACCATTCTCAGTGAGAAAGAAGCGCGATTCATAAGGACCTACTTCCCCGTTCAACATGAATTCATGCCTACACCAAACTTCTTCAAAAGTTCTCCGAACATTCTTTTTCGCCGCCATGCCGTTTCAATAATCGCCAAACACTCGAGGAGTATCGGTCCCGATACATTTATTCCATATCTTGCTATGAACTATTTTGATCGCTTCTTTTCCATGAACAAAACGTTCAAGGAGGATGTGGAAGGTTGTAATAATGATACTGAAAAAGTTCGTTTGATTGCTATCTCTTGTCTCTCCATATCTGCCAAGTTAAGGAATAAAGAATTCTCAGTTGAACAGTTTTTGAGGGACAATAATTTGATGATAACTCCTCAGATGATAATGAGAATGGAGTTTAAAATTCTCCATGAACTCCGCTGGAAAATCCGACCTGTGACTCCCTTCACCTATCTGAACTTCTATTACCGTTACTTTAAACAATTTGGTGGTTATAAACGTCGTTGCATTAATGAGATCATAGTTCAAGCTCAAGGAGACCACACCTTTGTTCACTACCCACCTACTATGATTGCATCCACCGCTTTTCTGGCTGTTTCTCGAATGGCATATCCCACAAAGTATAACGAAATAGCACATCCCACGGCGCTTGCCAGACTTGGCTCTAAAGAGCAGGTGGTGCAATGTGCAAAGAAGATTTTTAATCTTTGCAGGACTATGAAGATCCGGATTGAGATCCCTGAATCAGGAGGTCGCAGCGCTTTAAGTAAAGTCATGGCAGCACGCCAAAAGCAAAAGCAAGTCGAAGACAGAAGGGAAAAAGCGGCGGCGGTGGTTGATTCATCTGAAGAAGAAGAAGGAGGGACTGCATTAGTCAGGCGAAAACGGAACACGGGCAATACCACAGGGACTTCTCAGGTGCAGGTGCCAGTAAAGGTGGGGGAGGTAATGGACAAGGGCAAGGAAACGGCAGTGGAAGTAACAGAAACATCTGTTGAAGATAAAGCCAGGGTACTTGAGGCTATAATCCGACGAGGATTGGAAAAGGGCAAGGCAGTAGTGGGTGAGGAGCCACAAACGCAGATAGGGGGGTCTAGGATTTTAGAGCTTGTAGCACCTAAGAAGCTAATGATTTTTGAGCTGAAGTGGCCCACAGAAGTTCCACCACTAGAACTACTAGAAATAAAACAAGCGCTGCCAGAAGTACTAGAAGAAGAGGAAGAAGAGTCGCAGACAGTTGACAAAGATACTGGCAAGAAAAAAAATCGTGGCTGCAACATTGTTTAG 1302 0.4386 MASDVEFTILSEKEARFIRTYFPVQHEFMPTPNFFKSSPNILFRRHAVSIIAKHSRSIGPDTFIPYLAMNYFDRFFSMNKTFKEDVEGCNNDTEKVRLIAISCLSISAKLRNKEFSVEQFLRDNNLMITPQMIMRMEFKILHELRWKIRPVTPFTYLNFYYRYFKQFGGYKRRCINEIIVQAQGDHTFVHYPPTMIASTAFLAVSRMAYPTKYNEIAHPTALARLGSKEQVVQCAKKIFNLCRTMKIRIEIPESGGRSALSKVMAARQKQKQVEDRREKAAAVVDSSEEEEGGTALVRRKRNTGNTTGTSQVQVPVKVGEVMDKGKETAVEVTETSVEDKARVLEAIIRRGLEKGKAVVGEEPQTQIGGSRILELVAPKKLMIFELKWPTEVPPLELLEIKQALPEVLEEEEEESQTVDKDTGKKKNRGCNIV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03268 433 Coils Coil 270 290 - -
Trre12g03268 433 Gene3D - 31 149 - -
Trre12g03268 433 Gene3D - 25 235 - -
Trre12g03268 433 PANTHER CYCLINS 11 239 IPR039361 -
Trre12g03268 433 Pfam Cyclin, N-terminal domain 20 148 IPR006671 -
Trre12g03268 433 MobiDBLite consensus disorder prediction 283 310 - -
Trre12g03268 433 Pfam Cyclin, C-terminal domain 151 247 IPR004367 -
Trre12g03268 433 SUPERFAMILY Cyclin-like 128 244 IPR036915 -
Trre12g03268 433 SUPERFAMILY Cyclin-like 11 146 IPR036915 -
Trre12g03268 433 SMART Cyclin_C_2 151 286 IPR004367 -
Trre12g03268 433 MobiDBLite consensus disorder prediction 408 433 - -
Trre12g03268 433 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03268 Trre-Chr12 47844921 47847440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03268 19 238 Core Cell Cycle Gene Families AT4G03270 29.437 9.50e-23 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03268 K18812 - tpra:123896488 500.36