Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03263 ATGCAAAACTACTACTACAACACCACCGACGACGACAACGACAACGACAACGTCGTCTACGAGGACGAAGGCGAGGACGAGTATGAAGAAGAAGAAGAAAAAGAAGAAACCAAAACCAAAACAAACAACATTGTTTTCAATGGTTCTTCACGTTGTTCATCATTTTCATTGAGTAGAGTATTACTTGACCCGAGAGGAAAATGGGTTGAAGAATGGAACCGGGTATTTCTTTTGGTACATGCGATGGGTTTATTTGTAGACCCATTATTTTTCTACACGCTGTCTATAAGTGACACGTGTATGTGTCTGTTTATTGACTGTTGGTTACTCGTTACCGTCACCGTTATCCGTTGCATGACGGACGCGTTACATCTATGGAATATTTGGTTGCAGTTCTATATTGAGAAACGCTCCTCTTTTGGCTTTCTTCATCGTACTTCTTCTTCACATGTTTTTCCTTACTTCAAACCCAACAAAGAGTTTTTCTTTGATATCTTTGTCATCCTCCCTCTTCCTCAGATTGTATTATGGGTGACAATTCCGTCTATGTTAAAAGAAGGATCAATTACACGGGTGATGATTGTATTGTTGACTATGTTCCTGTTTCAATACCTTCCTAAAATTTTTCACTCCGTCAACTTCGTGCGTCGCAAACTCTTAGCCGGTTACATTTTTGGAACCATTTGGTGGGGATTCGCTCTCAACATGATCGCTTATTTTGTCGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTGGGACTTCAAAGGGGAATGAATTGTCTAGGAGAGCAATGTGAGACAACAACAGGTTGTGGTTTGAGAACAATGTGTTGCAAAGAACCAATATACTATGGAAGCTATAGCATGATGAAGAAATTAGAGAAAACAAGGTTGATATGGGCACAAAACAAAGAAGCAAGGACTACATGTTTAGATAGTGCTGACAACTATGAATATGGAGTTTATGAATGGAGTGTGCAACTTTTAACAAATAATAGCCGAATTGAAAAGATACTCCTCCCTATCTTTTGGGGCTTAATGACTCTTAGCACTTTTGGGAACCTCCAGAGCACAACAGAAAGGATGGAAACTGTTTTCAATATTATTGTGTTGACCAGTGGCCTCCTTCTAGTCACTATGCTAATTGGAAACATTAAGGTATTTTTACATGCTACAACATCGAAGAAGCGAGAGATGAAATTGAAGATGAAGAACCTTGAATGGATGATGAACAAAAGACGCTTGCCACAAGGGCTCCGACAACGTGTGCGTAACTACGAGAGACAATGTTGGGCTGCGATGCGCGGGGTTGATGAATGCCAATTAATCAAAAACCTCCCTGAGGGTTTGAGAAGGGACATCAAGTACCATCTTTGTTTGGGTTTGGTGAGACAGGTGCCATTATTTCAGCATATGGATGAATTGGTGCTAGAGAACATTTGTGACCGTGTCAAGTCCCTTGTATTCACAAAGGGAGAAACACTAACAAGAGAGGGAGATCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCATCTTCAAAGTAGCCAAGTCCTAAGAGATGGAGTAAAAAGTTGTTGCATGTTAGGACCAGGAAACTTTAGTGGTGATGAGCTTCTGTCATGGTGTTTAAGAAGGCCATTCGTACCACGTCTTCCAACATCATCATCAACTTTGGTCACACTTGAAACAACAGAGGTATTTGGACTTGAAGCAGAGGATGTCAAATATGTGACACAACATTTTAGGTACACATTTACAAAGGAAAATGTTAGGAGAAGTGTTAGATATTACTCACCTGGATGGAGAACTTGGGCTGCTGTGGCAATTCAATTGGCTTGGAGAAGGTATAGACATAGGTTGACTTTGACTTCTTTGTCCTTTATTAGGCCACGTAGACCTTTGTCAAGGTCTACATCTATGGAAGAAGATAGACTTCGTCTTTATACAGCTTTGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGATTCTGATTTTGATTCTTCATAA 2016 0.4033 MQNYYYNTTDDDNDNDNVVYEDEGEDEYEEEEEKEETKTKTNNIVFNGSSRCSSFSLSRVLLDPRGKWVEEWNRVFLLVHAMGLFVDPLFFYTLSISDTCMCLFIDCWLLVTVTVIRCMTDALHLWNIWLQFYIEKRSSFGFLHRTSSSHVFPYFKPNKEFFFDIFVILPLPQIVLWVTIPSMLKEGSITRVMIVLLTMFLFQYLPKIFHSVNFVRRKLLAGYIFGTIWWGFALNMIAYFVASHAAGACWYLLGLQRGMNCLGEQCETTTGCGLRTMCCKEPIYYGSYSMMKKLEKTRLIWAQNKEARTTCLDSADNYEYGVYEWSVQLLTNNSRIEKILLPIFWGLMTLSTFGNLQSTTERMETVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKREMKLKMKNLEWMMNKRRLPQGLRQRVRNYERQCWAAMRGVDECQLIKNLPEGLRRDIKYHLCLGLVRQVPLFQHMDELVLENICDRVKSLVFTKGETLTREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFVPRLPTSSSTLVTLETTEVFGLEAEDVKYVTQHFRYTFTKENVRRSVRYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRSTSMEEDRLRLYTALLTSPKPNQDDFDSDFDSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03263 671 SUPERFAMILY Voltage-gated potassium channels 63 390 - -
Trre12g03263 671 Pfam Cyclic nucleotide-binding domain 489 577 IPR000595 -
Trre12g03263 671 SUPERFAMILY cAMP-binding domain-like 395 583 IPR018490 -
Trre12g03263 671 CDD CAP_ED 469 575 IPR000595 -
Trre12g03263 671 FunFam cyclic nucleotide-gated ion channel 4 467 585 - -
Trre12g03263 671 Gene3D Helix hairpin bin 394 460 - -
Trre12g03263 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 34 662 - -
Trre12g03263 671 MobiDBLite consensus disorder prediction 1 39 - -
Trre12g03263 671 Gene3D Jelly Rolls 467 585 IPR014710 -
Trre12g03263 671 MobiDBLite consensus disorder prediction 14 33 - -
Trre12g03263 671 ProSiteProfiles cAMP/cGMP binding motif profile. 469 548 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03263 Trre-Chr12 47752135 47757492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03263 47 665 Ion Channels AT5G54250 73.534 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03263 K05391 - gmx:100800795 1002.66