Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03261 ATGGCATTGATGGCAGCAAGCTCAGCAACTGTTGTTAAGCAAACTCCTTTCCTTGGTCAAAGGAAGGGTGCTAATTCTCTTAGAGATGTTGTCGCCATGGGAACTTCAAAAGTCACTATGGGAAATGAATTGTGGTATGGACCAGACAGAGTGAAATATTTGGGACCATTTTCAGCTCAAACTCCTTCATACTTAACCGGAGAATTTCCCGGTGATTATGGTTGGGACACTGCTGGTTTATCTGCCGACCCAGAAGCTTTTGCCAAGAACAGGGCTCTTGAGGTGATTCATGGGAGATGGGCTATGCTAGGAGCACTAGGATGCATCACACCAGAAGTACTTGAAAAATGGGTGAGAGTTGACTTCAAAGAACCAGTTTGGTTCAAAGCAGGATCACAAATATTCTCCGAAGGTGGACTTGACTACTTAGGAAACCCAAACCTTGTTCATGCACAAAGCATCTTAGCAGTACTAGGTTTCCAAGTTGTTCTAATGGGACTTGTTGAAGGATTCCGCATCAACGGTCTTCCCGGTGTTGGAGATGGCAACAATCTTTACCCTGGTGGCCAATACTTTGACCCTCTTGGTCTTGCTGACGATCCAGTTACTTTCGCCGAACTTAAAGTGAAGGAAATCAAGAATGGAAGATTGGCTATGTTTTCAATGTTTGGTTTCTTTGTTCAAGCTATTGTTACTGGTAAAGGACCTTTGGAGAATCTTTTGGATCACATTGATAACCCTGTTGCTAACAATGCTTGGGTTTATGCTACCAAGTTTGTACCTGGTGCTTAA 792 0.4343 MALMAASSATVVKQTPFLGQRKGANSLRDVVAMGTSKVTMGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHIDNPVANNAWVYATKFVPGA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03261 263 Gene3D Chlorophyll a/b binding protein domain 52 256 - -
Trre12g03261 263 FunFam Chlorophyll a-b binding protein, chloroplastic 52 256 - -
Trre12g03261 263 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 10 262 IPR001344 GO:0009765|GO:0016020
Trre12g03261 263 Pfam Chlorophyll A-B binding protein 62 229 IPR022796 -
Trre12g03261 263 SUPERFAMILY Chlorophyll a-b binding protein 44 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03261 Trre-Chr12 47718682 47720141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03261 8 262 Chloroplast and Mitochondria Gene Families AT2G05070 67.669 3.01e-124 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03261 K08914 - vvi:100260599 506.523