Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g03259 | ATGTTATCACCTTCACCATCTGCTATTGCAAGAAGTTCTTTAGAAGAGATGCTTGATTCTCTTCGTCGGAGAGACGAAGAGGAGAAGCCTAAAGACCTACCGCCGGCATTGCCATCAAGGCCTATGTCAAGAGGTCGGTTGCCGCCGGCGAAAAGGTCTTTGCCTAAAAGCTTTAAGGTTGATGGAGAAAATGAAAAGGAAAAAATGGGACATAGAAGGAGAGGAAGTTTTGGAAGCAAGAAGTTAATGTTGGATTTGGAATCTCCTTATGTTGTTGTTTCAGAAGAGCATACTGTTGTTACTAGTGAACAACAATCTTCACCTGGTCCTGTTTCTTCAATTCCTGCTGATGATTCTTCTGTTGCTCCACCTTCTCCGGAATTGGAAGATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCGAAAGGAAAGTGGGGACTGGGAACAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGGAAGTGGCCAGAACAGAGCTCCTACCAGCTAATCCTGATATTTTAGAGGGTGTGGATGATCTTATACAGCTCAGCTATTTGAATGAGCCCTCGGTTCTTCACAATCTTCGGTTTAGATATTCTCAAGACATGATTTATAGTAAAGCAGGACCGATTTTAATTGCACTCAATCCCTTCAAAGATGTACCGATTTATGGAAACCAATATGTCGCTGCTTATAGAAAGAAATCTCTTGATAGTCCTCACGTTTATGCAATGGTAGATGCAGCTTATAATGAGATGATAGGAGAAGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGAGCCGGGAAGACAGAAACAGCAAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACTTCTCGGAACGACAACTCTAGTAGATTTGGGAAGTTGATTGAAATTCATTTCAGCGCAACTGGTAAAATGTGTGGGGCTAAAATTCAAACCTTTCTTCTAGAAAAGTCAAGAGTTGTTCAATTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCTGGATCTTCACCTCATCTTAAAGAGAGACTAAATCTTAGAGCGGCCAGTGAATATAAATATCTTAATCAGAGTGACTGCATGGCAATTGATGGTGTTGATGACGCTAAAAAGTTTCATAGGCTGAGGAAAGCCTTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAACGGGTCTTTAAGATGCTCACTGCAATATTATGGCTTGGAAATATATCTTTCGAAGTTAATGATAATGACAATCACATTGAAGTGGTGAACGATGAAGCTGTAACCAGTGCTGCTTCGCTGATGGGTTGCAGTCCTCAAGGACTAATGACAGTATTATCTACTCATAAAATCCAAGCTGGCAAGGATACTATCACCAAAACATTGACATTGCGGCAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGATTGGCTAGTAGAGCAAGTTAACAAGTCGCTTGAAGTGGGAAAACGACGCACCGGAAGATCCATAAGTATCCTCGATATTTACGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTATGCATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAACCGGCATCTGTTTAAACTGGAGCAGCAGGACTACGAAATAGATGGCGTTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGAGTGTTTGGATCTCATTGAGAAGAAGCCTATAGGGCTACTCTCTCTGTTGGACGAGGAATCAAATTTTCCAAGGGCCACTGATCTAACACTTGCCAACAAACTCAAGCAGCACCTGCAAACTAATCCTTGCTTCAAAGGGGACTGGGGAAGAGGCTTCAGTGTTTGTCATTATGCAGGCGAGGTTTTGTATGATACAAGTGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCCGATTCCAGTCAACTACTATCATCTTGTAGTTGCGAACTGCTGCAATCGTTCTCCAAGACGCTTAACCAGTCTCAGAAGCAATCAAATTCTCAGCACGTAGGTGCTTTTGATTCGCAAAAGCAGAGTGTTGGAACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAGTTGGAGGGCACGACGCCTCACTTTATTCGCTGTATAAAGCCAAATGCAAAGCAACATCCTGGCATATATGATGAAGATCTTGTTCTCCAGCAACTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGAATTTCAAGGGCCGGATATCCTACTCGAATGACACATCAAGAGTTTGCCAGAAGGTACGGATTTCTGCTCTATGAGGCCAACACATCTCAAGATCCGTTGAGTGTCTCGGTTGCTGTTTTGCAACAGTTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTCGAGGATAAGAGAAAACTGGTTTTGCAGGGAACACTCGGGGTTCAAAAATACGTTCGTGGTCATCAAGCTCGCAATCATTACAATAAACTTAAGGAAGGAGTGACCATTTTACAATCATTTGTTCGTGGAGAAATTGCAAGAAGAAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATCGAGGAGATACAGGCTATCATAACACTACAATCTGTAATTCGTGGATGGTTGGTTCGAAAGCATAATAGTAGCTTGAATAAGTTTAAGAAACATCCCGAGAATGGAAGATCTAGGCGAAGGTCACGTTCGAAGATGTCAGACGACAAGGATGCGAAAGATCGGGTGCAAAATCTGCCTTCGGCTTTAGCAGAACTCCAAAGGCGGGTTGTTAAGGCCGAATCAACTATAGAGCAAAAAGAAGAGGAAAATGCCGAGTTGAGGGAACAGCTAAAACAATTTGAGAAAAGATGGATTGAATACGAGAAAAAGATGAAAACAATGGAGGAAATGTGGCAAAGACAAATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAACCAGCCTTGCTTCTGAGAATGCCAATGGTCAACCATCAAGACATGATGTAGCATCACCATCGCCTTTCTGTTATGATTCCGAGGATGCTATTTCGATGGGATCTCGAACGCCTCGAACGCCCGGTTGCAGCACACCTTTGAAGTATTCTAGTAGTCTTTCTGAAATCAGAGCAATGAGAGAAGGTAACGGTTCATTGAACAATCTGATGAAAGAGTTCGAGCAGCGCAGACAGACATTCGATGACGATGCAAGAGCTTTGGCTGAAGTTAGACCAACAGGGCAATATGCGAATCCCAATTCCATTGATGAACTGAGAAAACTCAAACACAAATTTGAAGGGTGGAAGAAAGAATACAAGACGCGGTTACGGGAGACTAAAGCAAGACTTAAGTTAGGGAATGCAGAAATGGATAAAAGCCGGCGAAAATGGTGGGGGAAATTGAGTTCTAGAGTACAACAATAA | 3606 | 0.4168 | MLSPSPSAIARSSLEEMLDSLRRRDEEEKPKDLPPALPSRPMSRGRLPPAKRSLPKSFKVDGENEKEKMGHRRRGSFGSKKLMLDLESPYVVVSEEHTVVTSEQQSSPGPVSSIPADDSSVAPPSPELEDDNVSYFIKKKLHVWCRQPKGKWGLGTIQSTSGEQASVSLSNGNVMEVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLRFRYSQDMIYSKAGPILIALNPFKDVPIYGNQYVAAYRKKSLDSPHVYAMVDAAYNEMIGEEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTFLLEKSRVVQLADGERSYHIFYQLCAGSSPHLKERLNLRAASEYKYLNQSDCMAIDGVDDAKKFHRLRKALDVVQMCKEDQERVFKMLTAILWLGNISFEVNDNDNHIEVVNDEAVTSAASLMGCSPQGLMTVLSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLIEKKPIGLLSLLDEESNFPRATDLTLANKLKQHLQTNPCFKGDWGRGFSVCHYAGEVLYDTSGFLEKNRDPMPSDSSQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGAFDSQKQSVGTKFKGQLFKLMHQLEGTTPHFIRCIKPNAKQHPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLYEANTSQDPLSVSVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKLVLQGTLGVQKYVRGHQARNHYNKLKEGVTILQSFVRGEIARRKYGVMVKSSITISSENIEEIQAIITLQSVIRGWLVRKHNSSLNKFKKHPENGRSRRRSRSKMSDDKDAKDRVQNLPSALAELQRRVVKAESTIEQKEEENAELREQLKQFEKRWIEYEKKMKTMEEMWQRQMASLQMSLAAAKTSLASENANGQPSRHDVASPSPFCYDSEDAISMGSRTPRTPGCSTPLKYSSSLSEIRAMREGNGSLNNLMKEFEQRRQTFDDDARALAEVRPTGQYANPNSIDELRKLKHKFEGWKKEYKTRLRETKARLKLGNAEMDKSRRKWWGKLSSRVQQ | 1201 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g03259 | 1201 | PRINTS | Myosin heavy chain signature | 603 | 631 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | PRINTS | Myosin heavy chain signature | 221 | 240 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | PRINTS | Myosin heavy chain signature | 275 | 300 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | PRINTS | Myosin heavy chain signature | 318 | 345 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | PRINTS | Myosin heavy chain signature | 550 | 578 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 431 | 539 | - | - | |
| Trre12g03259 | 1201 | Coils | Coil | 983 | 1031 | - | - | |
| Trre12g03259 | 1201 | Coils | Coil | 1163 | 1183 | - | - | |
| Trre12g03259 | 1201 | Gene3D | - | 795 | 863 | - | - | |
| Trre12g03259 | 1201 | Gene3D | - | 562 | 751 | - | - | |
| Trre12g03259 | 1201 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 143 | 910 | IPR027417 | - | |
| Trre12g03259 | 1201 | ProSiteProfiles | IQ motif profile. | 886 | 915 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | ProSiteProfiles | Myosin motor domain profile. | 191 | 861 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | ProSiteProfiles | IQ motif profile. | 923 | 952 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | Pfam | IQ calmodulin-binding motif | 870 | 883 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | Pfam | IQ calmodulin-binding motif | 925 | 942 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | Pfam | IQ calmodulin-binding motif | 890 | 906 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | FunFam | Myosin IE heavy chain | 431 | 539 | - | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 97 | 114 | - | - | |
| Trre12g03259 | 1201 | Gene3D | - | 374 | 430 | - | - | |
| Trre12g03259 | 1201 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 138 | 187 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 960 | 975 | - | - | |
| Trre12g03259 | 1201 | SMART | MYSc_2a | 185 | 862 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03259 | 1201 | FunFam | Unconventional myosin-XIX | 562 | 751 | - | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 16 | 34 | - | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 1 | 76 | - | - | |
| Trre12g03259 | 1201 | CDD | MYSc_Myo8 | 205 | 849 | IPR036022 | - | |
| Trre12g03259 | 1201 | PANTHER | MYOSIN | 184 | 1192 | - | - | |
| Trre12g03259 | 1201 | SMART | iq_5 | 885 | 907 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | SMART | iq_5 | 922 | 944 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | SMART | iq_5 | 862 | 884 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | FunFam | Myosin heavy chain | 374 | 430 | - | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 97 | 127 | - | - | |
| Trre12g03259 | 1201 | Gene3D | - | 868 | 913 | - | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 947 | 975 | - | - | |
| Trre12g03259 | 1201 | Gene3D | Kinesin motor domain | 190 | 794 | IPR036961 | - | |
| Trre12g03259 | 1201 | MobiDBLite | consensus disorder prediction | 56 | 72 | - | - | |
| Trre12g03259 | 1201 | ProSiteProfiles | IQ motif profile. | 865 | 891 | IPR000048 | GO:0005515 | |
| Trre12g03259 | 1201 | Pfam | Myosin head (motor domain) | 193 | 849 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre12g03259 | Trre-Chr12 | 47682002 | 47692153 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre12g03259 | 1 | 1194 | Myosins gene family | AT5G54280 | 62.147 | 0.0 | 1543 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g03259 | K10357 | - | gmx:100819335 | 1887.08 |