Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre12g03257 | ATGATGTTATCACCTTCACCATCTGCTATTGCAAGAAGTTCTTTAGAAGAGATGCTTGATTCTCTTCGTCGGAGAGACGAAGAGGAGAAGCCTAAAGACCTACCGCCGGCATTGCCATCAAGGCCTATGTCAAGAGGTCGGTTGCCGCCGGCGAAAAGGTCTTTGCCTAAAAGCTTTAAGGTTGATGGAGAAAATGAAAAGGAAAAAATGGGACATAGAAGGAGAGGAAGTTTTGGAAGCAAGAAGTTAATGTTGGATTTGGAATCTCCTTATGTTGTTGTTTCAGAAGAGCATACTGTTGTTACTAGTGAACAACAATCTTCACCTGGTCCTGTTTCTTCAATTCCTGCTGATGATTCTTCTGTTGCTCCACCTTCTCCGGAATTGGAAGATGACAATGTTTCTTATTTCATCAAAAAGAAACTTCATGTTTGGTGTAGGCAACCGAAAGGAAAGTGGGGACTGGGAACAATACAGTCAACTTCGGGAGAACAAGCATCTGTTTCACTCTCAAATGGAAATGTTATGGAAGTGGCCAGAACAGAGCTCCTACCAGCTAATCCTGATATTTTAGAGGGTGTGGATGATCTTATACAGCTCAGCTATTTGAATGAGCCCTCGGTTCTTCACAATCTTCGGTTTAGATATTCTCAAGACATGATTTATAGTAAAGCAGGACCGATTTTAATTGCACTCAATCCCTTCAAAGATGTACCGATTTATGGAAACCAATATGTCGCTGCTTATAGAAAGAAATCTCTTGATAGTCCTCACGTTTATGCAATGGTAGATGCAGCTTATAATGAGATGATAGGAGAAGAAGTAAATCAGTCCATTATCATAAGTGGCGAGAGTGGAGCCGGGAAGACAGAAACAGCAAAAATTGCGATGCAATACTTAGCTGCTCTTGGTGGTGGCAGTTGTGGGATAGAAAATGAAGTTCTTCAGACAAATGTTATACTAGAAGCTTTTGGCAATGCAAAAACTTCTCGGAACGACAACTCTAGTAGATTTGGGAAGTTGATTGAAATTCATTTCAGCGCAACTGGTAAAATGTGTGGGGCTAAAATTCAAACCTGTAAGCATGTTCAATCAAGAGTTGTTCAATTGGCTGATGGCGAGAGGTCTTATCACATATTTTATCAACTTTGTGCTGGATCTTCACCTCATCTTAAAGAGAGACTAAATCTTAGAGCGGCCAGTGAATATAAATATCTTAATCAGAGTGACTGCATGGCAATTGATGGTGTTGATGACGCTAAAAAGTTTCATAGGCTGAGGAAAGCCTTGGATGTCGTTCAAATGTGCAAAGAGGATCAAGAACGGGTCTTTAAGATGCTCACTGCAATATTATGGCTTGGAAATATATCTTTCGAAGTTAATGATAATGACAATCACATTGAAGTGGTGAACGATGAAGCTGTAACCAGTGCTGCTTCGCTGATGGGTTGCAGTCCTCAAGGACTAATGACAGTATTATCTACTCATAAAATCCAAGCTGGCAAGGATACTATCACCAAAACATTGACATTGCGGCAGGCAATTGATGCAAGAGATGCATTAGCAAAATTTATCTATGCAAGCTTGTTTGATTGGCTAGTAGAGCAAGTTAACAAGTCGCTTGAAGTGGGAAAACGACGCACCGGAAGATCCATAAGTATCCTCGATATTTACGGGTTTGAGTCATTCCAGAAAAACAGCTTTGAACAGTTATGCATAAACTATGCCAATGAGAGGCTTCAACAACATTTCAACCGGCATCTGTTTAAACTGGAGCAGCAGGACTACGAAATAGATGGCGTTGATTGGACCAAAGTAGATTTTGAGGACAATCAAGAGTGTTTGGATCTCATTGAGAAGAAGCCTATAGGGCTACTCTCTCTGTTGGACGAGGAATCAAATTTTCCAAGGGCCACTGATCTAACACTTGCCAACAAACTCAAGCAGCACCTGCAAACTAATCCTTGCTTCAAAGGGGACTGGGGAAGAGGCTTCAGTGTTTGTCATTATGCAGGCGAGGTTTTGTATGATACAAGTGGCTTTCTAGAAAAGAACAGAGATCCAATGCCTTCCGATTCCAGTCAACTACTATCATCTTGTAGTTGCGAACTGCTGCAATCGTTCTCCAAGACGCTTAACCAGTCTCAGAAGCAATCAAATTCTCAGCACGTAGGTGCTTTTGATTCGCAAAAGCAGAGTGTTGGAACAAAGTTCAAGGGTCAATTATTCAAGTTGATGCATCAGTTGGAGGGCACGACGCCTCACTTTATTCGCTGTATAAAGCCAAATGCAAAGCAACATCCTGGCATATATGATGAAGATCTTGTTCTCCAGCAACTCAAGTGTTGTGGAGTTTTGGAGGTTGTTAGAATTTCAAGGGCCGGATATCCTACTCGAATGACACATCAAGAGTTTGCCAGAAGGTACGGATTTCTGCTCTATGAGGCCAACACATCTCAAGATCCGTTGAGTGTCTCGGTTGCTGTTTTGCAACAGTTTAATATCCCTCCTGAAATGTACCAAGTTGGCTTCACCAAACTGTATCTTCGAACAGGGCAGGTTGGTGCACTCGAGGATAAGAGAAAACTGGTTTTGCAGGGAACACTCGGGGTTCAAAAATACGTTCGTGGTCATCAAGCTCGCAATCATTACAATAAACTTAAGGAAGGAGTGACCATTTTACAATCATTTGTTCGTGGAGAAATTGCAAGAAGAAAATATGGTGTTATGGTGAAGTCTTCTATAACTATTTCTTCTGAAAATATCGAGGAGATACAGGCTATCATAACACTACAATCTGTAATTCGTGGATGGTTGGTTCGAAAGCATAATAGTAGCTTGAATAAGTTTAAGAAACATCCCGAGAATGGAAGATCTAGGCGAAGGTCACGTTCGAAGATGTCAGACGACAAGGATGCGAAAGATCGGGTGCAAAATCTGCCTTCGGCTTTAGCAGAACTCCAAAGGCGGGTTGTTAAGGCCGAATCAACTATAGAGCAAAAAGAAGAGGAAAATGCCGAGTTGAGGGAACAGCTAAAACAATTTGAGAAAAGATGGATTGAATACGAGAAAAAGATGAAAACAATGGAGGAAATGTGGCAAAGACAAATGGCATCTTTGCAAATGAGTCTTGCTGCTGCTAAAACCAGCCTTGCTTCTGAGAATGCCAATGGTCAACCATCAAGACATGATGTAGCATCACCATCGCCTTTCTGTTATGATTCCGAGGATGCTATTTCGATGGGATCTCGAACGCCTCGAACGCCCGGTTGCAGCACACCTTTGAAGTATTCTAGTAGTCTTTCTGAAATCAGAGCAATGAGAGAAGGTAACGGTTCATTGAACAATCTGATGAAAGAGTTCGAGCAGCGCAGACAGACATTCGATGACGATGCAAGAGCTTTGGCTGAAGTTAGACCAACAGGGCAATATGCGAATCCCAATTCCATTGATGAACTGAGAAAACTCAAACACAAATTTGAAGGGTGGAAGAAAGAATACAAGACGCGGTTACGGGAGACTAAAGCAAGACTTAAGTTAGGGAATGCAGAAATGGATAAAAGCCGGCGAAAATGGTGGGGGAAATTGAGTTCTAGAGTACAACAATAA | 3609 | 0.417 | MMLSPSPSAIARSSLEEMLDSLRRRDEEEKPKDLPPALPSRPMSRGRLPPAKRSLPKSFKVDGENEKEKMGHRRRGSFGSKKLMLDLESPYVVVSEEHTVVTSEQQSSPGPVSSIPADDSSVAPPSPELEDDNVSYFIKKKLHVWCRQPKGKWGLGTIQSTSGEQASVSLSNGNVMEVARTELLPANPDILEGVDDLIQLSYLNEPSVLHNLRFRYSQDMIYSKAGPILIALNPFKDVPIYGNQYVAAYRKKSLDSPHVYAMVDAAYNEMIGEEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSCGIENEVLQTNVILEAFGNAKTSRNDNSSRFGKLIEIHFSATGKMCGAKIQTCKHVQSRVVQLADGERSYHIFYQLCAGSSPHLKERLNLRAASEYKYLNQSDCMAIDGVDDAKKFHRLRKALDVVQMCKEDQERVFKMLTAILWLGNISFEVNDNDNHIEVVNDEAVTSAASLMGCSPQGLMTVLSTHKIQAGKDTITKTLTLRQAIDARDALAKFIYASLFDWLVEQVNKSLEVGKRRTGRSISILDIYGFESFQKNSFEQLCINYANERLQQHFNRHLFKLEQQDYEIDGVDWTKVDFEDNQECLDLIEKKPIGLLSLLDEESNFPRATDLTLANKLKQHLQTNPCFKGDWGRGFSVCHYAGEVLYDTSGFLEKNRDPMPSDSSQLLSSCSCELLQSFSKTLNQSQKQSNSQHVGAFDSQKQSVGTKFKGQLFKLMHQLEGTTPHFIRCIKPNAKQHPGIYDEDLVLQQLKCCGVLEVVRISRAGYPTRMTHQEFARRYGFLLYEANTSQDPLSVSVAVLQQFNIPPEMYQVGFTKLYLRTGQVGALEDKRKLVLQGTLGVQKYVRGHQARNHYNKLKEGVTILQSFVRGEIARRKYGVMVKSSITISSENIEEIQAIITLQSVIRGWLVRKHNSSLNKFKKHPENGRSRRRSRSKMSDDKDAKDRVQNLPSALAELQRRVVKAESTIEQKEEENAELREQLKQFEKRWIEYEKKMKTMEEMWQRQMASLQMSLAAAKTSLASENANGQPSRHDVASPSPFCYDSEDAISMGSRTPRTPGCSTPLKYSSSLSEIRAMREGNGSLNNLMKEFEQRRQTFDDDARALAEVRPTGQYANPNSIDELRKLKHKFEGWKKEYKTRLRETKARLKLGNAEMDKSRRKWWGKLSSRVQQ | 1202 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 98 | 115 | - | - | |
| Trre12g03257 | 1202 | ProSiteProfiles | Myosin motor domain profile. | 192 | 862 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | FunFam | Unconventional myosin-XIX | 563 | 752 | - | - | |
| Trre12g03257 | 1202 | ProSiteProfiles | IQ motif profile. | 887 | 916 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 17 | 35 | - | - | |
| Trre12g03257 | 1202 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 139 | 188 | IPR004009 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | CDD | MYSc_Myo8 | 206 | 850 | IPR036022 | - | |
| Trre12g03257 | 1202 | Gene3D | Kinesin motor domain | 191 | 795 | IPR036961 | - | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 961 | 976 | - | - | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 98 | 128 | - | - | |
| Trre12g03257 | 1202 | Coils | Coil | 1164 | 1184 | - | - | |
| Trre12g03257 | 1202 | SMART | MYSc_2a | 186 | 863 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | FunFam | Myosin heavy chain | 375 | 431 | - | - | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 57 | 73 | - | - | |
| Trre12g03257 | 1202 | Gene3D | - | 869 | 914 | - | - | |
| Trre12g03257 | 1202 | PANTHER | MYOSIN | 185 | 1193 | - | - | |
| Trre12g03257 | 1202 | PRINTS | Myosin heavy chain signature | 319 | 346 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | PRINTS | Myosin heavy chain signature | 222 | 241 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | PRINTS | Myosin heavy chain signature | 551 | 579 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | PRINTS | Myosin heavy chain signature | 604 | 632 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | PRINTS | Myosin heavy chain signature | 276 | 301 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | ProSiteProfiles | IQ motif profile. | 866 | 892 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | FunFam | Myosin IE heavy chain | 432 | 540 | - | - | |
| Trre12g03257 | 1202 | Gene3D | - | 796 | 864 | - | - | |
| Trre12g03257 | 1202 | Gene3D | - | 563 | 752 | - | - | |
| Trre12g03257 | 1202 | Coils | Coil | 984 | 1032 | - | - | |
| Trre12g03257 | 1202 | Pfam | IQ calmodulin-binding motif | 871 | 884 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | Pfam | IQ calmodulin-binding motif | 891 | 907 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | Pfam | IQ calmodulin-binding motif | 926 | 943 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | ProSiteProfiles | IQ motif profile. | 924 | 953 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | MobiDBLite | consensus disorder prediction | 948 | 976 | - | - | |
| Trre12g03257 | 1202 | Gene3D | - | 375 | 431 | - | - | |
| Trre12g03257 | 1202 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 432 | 540 | - | - | |
| Trre12g03257 | 1202 | SMART | iq_5 | 886 | 908 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | SMART | iq_5 | 923 | 945 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | SMART | iq_5 | 863 | 885 | IPR000048 | GO:0005515 | |
| Trre12g03257 | 1202 | Pfam | Myosin head (motor domain) | 194 | 850 | IPR001609 | GO:0003774|GO:0005524|GO:0016459 | |
| Trre12g03257 | 1202 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 144 | 911 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre12g03257 | Trre-Chr12 | 47681999 | 47692153 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre12g03257 | 1 | 1195 | Myosins gene family | AT5G54280 | 61.774 | 0.0 | 1533 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre12g03257 | K10357 | - | gmx:100819335 | 1876.68 |