Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03247 ATGAACGGGAAAGCCAACGTTACCAAAGAGCTTAACGCTAAACACAAGAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATCGGGAATGTGCTGACTGCAAAGCTAGAGCTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATCCAATCAATGGGAAACGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGCGCAAAGTATGAAGACAAGAGATGGGCTTCAAGGGATGGGAATCCGAAAACATCTTCTGGACTGCGTGAAGATAAAGCTCCTTCACATTTGCAGAGGCCTGTGGAAAAAAGTGGGCATGGTTATGCCACTGTTCACGAAAATACTGTTGAGGAAAGGAAGAAAATCCAGCCATCAAATGCAGTTCCTGTTACACGACGTAGGGTTCCTGCTCCTCGCAAAGTACCAGAGCAGGCAACTCCTGCTACCCAACCTCAGCACACTGAGAAAGTGGAACCCGTTGCCCCACAACAACCAGCTGAAACTTCAAAGCCGGCTACGGACACAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGACCAAAATGAAAATGGCTCCAAAGCAGCTGGTGCTACTGCTGATGATATTAACTGGGCAGGTTTTCAGTCTGCTGTGGAGGTGTCAACAACCGAGAAGACTGGCCCACCAAATGCAGTTGAGAGTACTCAGTTTGCACCTGGAATTGAGGATCTATTTAAAGATTCAATTTCTGTGACACCAAGTTTAGCTCCAGCAAAACCACAGAAAGATGTGAAAAATGATATAATGAGCCTCTTTGAGAAGAGCAATATCGTATCTCCATTTTCAATGCATCAACAACAGATTGCCATGCTAGTACAGCAGCAGTCTCTTTTGATGGCTGCTGGAGCTAAATCTACTGGTGTGGATCTCAAGCATCCTACTGGTATACAACAACCGAGTCCCAATGTTTCTGTTCAAAATTGGCCTGCTACTGGATTCCCAATATCTGGAGTAATGCCCATGGGTGCTCAGGGAGATCTGCAGAAACTTATGCAGACTAGAAACACGACTCCAGCTATTCAAGCAGGGAACTCTGTTCAATATCCACCATCTGGTTTCTATGGTATGGGGCAAGTTGGTCCGGTCAATGGTATGATGACAATGGTAGCCAATAAACCTCAATCAACTCCAGTGTCGTCAACCACTTCCAAGTCTGCGAAGGAATATGATTTTTCATCCTTAACACAAGGGATGTTTGCGAAACAATGA 1407 0.4449 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKARAPRWASVNLGIFICMQCSGIHRSLGVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEDKRWASRDGNPKTSSGLREDKAPSHLQRPVEKSGHGYATVHENTVEERKKIQPSNAVPVTRRRVPAPRKVPEQATPATQPQHTEKVEPVAPQQPAETSKPATDTAQSTPPKVDYATDLFNMLSMDDQNENGSKAAGATADDINWAGFQSAVEVSTTEKTGPPNAVESTQFAPGIEDLFKDSISVTPSLAPAKPQKDVKNDIMSLFEKSNIVSPFSMHQQQIAMLVQQQSLLMAAGAKSTGVDLKHPTGIQQPSPNVSVQNWPATGFPISGVMPMGAQGDLQKLMQTRNTTPAIQAGNSVQYPPSGFYGMGQVGPVNGMMTMVANKPQSTPVSSTTSKSAKEYDFSSLTQGMFAKQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03247 468 SUPERFAMILY ArfGap/RecO-like zinc finger 15 119 IPR037278 -
Trre12g03247 468 FunFam stromal membrane-associated protein 1 isoform X1 1 123 - -
Trre12g03247 468 SMART arf_gap_3 16 125 IPR001164 GO:0005096
Trre12g03247 468 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 468 IPR044520 GO:0005096
Trre12g03247 468 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 125 IPR001164 GO:0005096
Trre12g03247 468 Pfam Putative GTPase activating protein for Arf 17 120 IPR001164 GO:0005096
Trre12g03247 468 CDD ArfGap 19 112 - -
Trre12g03247 468 Gene3D Arf GTPase activating protein 2 125 IPR038508 -
Trre12g03247 468 MobiDBLite consensus disorder prediction 118 225 - -
Trre12g03247 468 MobiDBLite consensus disorder prediction 118 141 - -
Trre12g03247 468 MobiDBLite consensus disorder prediction 208 225 - -
Trre12g03247 468 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre12g03247 468 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03247 Trre-Chr12 47583644 47589046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03247 16 113 C2H2 Transcription Factor Family AT4G05330 47.748 1.19e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03247 K12486 - gmx:100780452 695.656