Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03246 ATGAACGGGAAAGCCAACGTTACCAAAGAGCTTAACGCTAAACACAAGAAGATACTGGAAGGACTTCTTAAACTACCAGAGAATCGGGAATGTGCTGACTGCAAAGCTAGAGCTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAAGTTTGGGGGTACATATATCAAAGGTTCGTTCTGCAACTCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATCCAATCAATGGGAAACGAGAGAGCAAATAGTTACTGGGAAGCAGAATTACCTCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGCGCAAAGTATGAAGACAAGAGATGGGCTTCAAGGGATGGGAATCCGAAAACATCTTCTGGACTGCGTGAAGATAAAGCTCCTTCACATTTGCAGAGGCCTGTGGAAAAAAGTGGGCATGGTTATGCCACTGTTCACGAAAATACTGTTGAGGAAAGGAAGAAAATCCAGCCATCAAATGCAGTTCCTGTTACACGACGTAGGGTTCCTGCTCCTCGCAAAGTACCAGAGCAGGCAACTCCTGCTACCCAACCTCAGCACACTGAGAAAGTGGAACCCGTTGCCCCACAACAACCAGCTGAAACTTCAAAGCCGGCTACGGACACAGCTCAAAGTACCCCTCCCAAAGTAGACTATGCTACAGACCTTTTCAACATGTTGTCTATGGATGACCAAAATGAAAATGGCTCCAAAGCAGCTGGTGCTACTGCTGATGATATTAACTGGGCAGGTTTTCAGTCTGCTGTGGAGGTGTCAACAACCGAGAAGACTGGCCCACCAAATGCAGTTGAGAGTACTCAGTTTGCACCTGGAATTGAGGATCTATTTAAAGATTCAATTTCTGTGACACCAAGTTTAGCTCCAGCAAAACCACAGAAAGATGTGAAAAATGATATAATGAGCCTCTTTGAGAAGAGCAATATCGTATCTCCATTTTCAATGCATCAACAACAGATTGCCATGCTAGTACAGCAGCAGTCTCTTTTGATGGCTGCTGGAGCTAAATCTACTGGTGTGGATCTCAAGCATCCTACTGGTATACAACAACCGAGTCCCAATGTTTCTGTTCAAAATTGGCCTGCTACTGGATTCCCAATATCTGGAGTAATGCCCATGGGTGCTCAGGGAGATCTGCAGAAACTTATGCAGACTAGAAACACGACTCCAGCTATTCAAGCAGGGAACTCTGTTCAATATCCACCATCTGGTTTCTATGGTATGGGGCAAGTTGGTCCGGTCAATGGTATGATGACAATGGTAGCCAATAAACCTCAATCAACTCCAGTGTCGTCAACCACTTCCAAGTCTGCGAAGGAATATGATTTTTCATCCTTAACACAAGGGATGTTTGCGAAACAATGA 1422 0.443 MNGKANVTKELNAKHKKILEGLLKLPENRECADCKARAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNERANSYWEAELPPNYDRVGIENFIRAKYEDKRWASRDGNPKTSSGLREDKAPSHLQRPVEKSGHGYATVHENTVEERKKIQPSNAVPVTRRRVPAPRKVPEQATPATQPQHTEKVEPVAPQQPAETSKPATDTAQSTPPKVDYATDLFNMLSMDDQNENGSKAAGATADDINWAGFQSAVEVSTTEKTGPPNAVESTQFAPGIEDLFKDSISVTPSLAPAKPQKDVKNDIMSLFEKSNIVSPFSMHQQQIAMLVQQQSLLMAAGAKSTGVDLKHPTGIQQPSPNVSVQNWPATGFPISGVMPMGAQGDLQKLMQTRNTTPAIQAGNSVQYPPSGFYGMGQVGPVNGMMTMVANKPQSTPVSSTTSKSAKEYDFSSLTQGMFAKQ 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03246 473 CDD ArfGap 19 117 - -
Trre12g03246 473 MobiDBLite consensus disorder prediction 123 230 - -
Trre12g03246 473 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Trre12g03246 473 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Trre12g03246 473 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Trre12g03246 473 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Trre12g03246 473 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Trre12g03246 473 MobiDBLite consensus disorder prediction 123 146 - -
Trre12g03246 473 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Trre12g03246 473 MobiDBLite consensus disorder prediction 213 230 - -
Trre12g03246 473 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Trre12g03246 473 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Trre12g03246 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 473 IPR044520 GO:0005096
Trre12g03246 473 SMART arf_gap_3 16 130 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03246 Trre-Chr12 47583644 47589046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03246 16 118 C2H2 Transcription Factor Family AT4G05330 51.351 1.14e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03246 K12486 - gmx:100780452 711.449