Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03238 ATGGTGATGATGAAACTTGTTTTGGTTGTTGTTACTGTTATTACATTTTTGGTGAATGTGTCATTTGCCTTATACACACCTCATGATAATTACTTAATTGCTTGTGGTTCATCTAAAAGTATAAACTTTCAAGATCGAGTTTTCGTTCCGGATTCACAGCATTCATCACTTGTGTTGAAAACTGGAAATTCAATTGTTGTTGCTAGTTCTAATTCAAGTGTTGTTCCATCTCCAATCTACCAATCAGCTAGGATTTTCAGTGAGAAAGGTTCTTATAGATTTGATGTTCAACAAGGTAGACATTGGATTAGGTTATATTTTTATCCTCTTCCAAACACTAGCCATAATTTGACTTCAGCTTCTATAACAGTTGTTAGTGATGATTTTGTTTTATTAAGCAACTTCACTTTTAGAAACTATAGTGGTTCTTATATGTTTAGGGAGTATGCTGTCAATGTGACTTCTGATTCTTTGACTGTAACCTTTATTCCTTTGAATGGTTCGGTTGCTTTTGTGAATGCAATTGAAGTTGTGTCGATGCCAGATGACTTGTTTGTCGATCAGGCATTGTCGCTTAGTCCATTAGCCCCTTTTAGTGGCCTTTCGGAACTTGCTTTTGAAACCGTTTACCGATTGAACATAGGAGGAACCTTGCTCACTGCAGAAAATGATACATTGGGAAGGACTTGGGAGAATGATCAGAAATACCTCCATGTGAACAGCTCGGTTACTAATGTGTCGGCTAGCCCTTCAAGCATTAGGTATCGACCAGGGGTTACTGCTGAGACGGCACCTAATTGGGTTTATGCCACTGCTGAAGCAATGGGGGATGCAAATGTTGCCAATTCAAATTTCAACATTACTTGGGTCTTTGATGTGGATCCAAGTTTCTCCTATTTTGTTCGACTTCACTTTTGCGATATTATGAGCAAGGCAATGAATACGTTAGTTTTCAATGTATTCATAAATACTGATATAGCTATCGGAAGCCTTGACCTATCATCGATGACTAATGATTTGGCTGTGCCTTACTTTAAGGATTTTGTTTCCAATGCCTCATCGGATAACACTTTGACGGTAAGCGTTGGTCCTGATACAATGGCAGACATAACAAATGCAACTATGAGTGGATTGGAGATAATGAAAATCAGCAATGCATTGAAGAGCTTGGATGGACTTTCTTCGGTCAAGAGTCTTCTTCCTAGTTCAAAATCAAACATGAACAAGATAGGAATCATTGCTGGTTCTGCCGCTGGTGCTTTAGTTGCCTTGGCTTTTGTTGGTTTGTGTTTTTTCTTGTTGGCGGGAAGAAATTCGAAATCTCCTCAAGAGGGTGGTCATTCATGGCTGCCATTGCCCTTGTATGGAAATTCTCAAACCATGACAAAAATGTCAACAACTTCACAGAAGAGTGGAGGAACTGCGAGCTTCATTTCTTCGACGAATCTTGGACGGTTCTTCACTTTCCAAGAAATCCTAGACGCAACCAACAAATTTGATGAGAAGCTTCTTCTTGGTGTTGGTGGTTTCGGCAGGGTTTATAGGGGAATCCTTGATGATGGTACCACTGTAGCTGTTAAAAGGGGAAATCCAAGATCTGAACAAGGTCTTGCTGAATTTCGAACGGAAATTGAGATGTTATCGAAGCTTCGCCACCGTCATCTTGTGTCTCTAATTGGTTACTGTGATGAAAGGTCAGAAATGATTCTTGTCTATGAATATATGGCTAATGGTCCCCTCAGGAGTCATTTGTATGGAACTGATCTACCACCTCTATCGTGGAAACAACGGCTCGATATTTGCATCGGAGCAGCAAGAGGACTTCATTATCTCCACACTGGTGCATCACAAAGCATAATTCATCGAGACGTAAAGACAACAAACATCCTTTTAGATGATAGCTTTGTTGCTAAAGTTGCTGACTTTGGCCTCTCCAAAACCGGTCCCGCGCTCGATCAGACTCACGTGAGCACGGCTGTTAAAGGTAGTTTTGGTTATCTTGATCCAGAATACTTTAGAAGGCAACAACTCACGGAGAAATCAGATGTTTATTCATTCGGAGTAGTTTTAATGGAAGTGCTATGCACAAGACCAGCTTTGAACCCTGTCCTTCCTAGGGAACAGGTTAATATAGCCGAGTGGGCGATGAATTGGCAGAAGAAGGGAATGCTTGATCAAATCATGGATCCTCAACTTGTTGGGAAGGTCAATCCTGCTTCACTCAAGAAGTTCGGGGAGACGGCGGAGAAGTGTTTGGCTGAGTATGGAGTGGACAGGCCATCTATGGGAGATGTTTTATGGAACCTCGAATATGCTTTGCAGCTCCAAGAAACCGCAACAGCACTCACAGAACCAGAAGATAACAGCACAAATCACATTACAGGAATTCAGTTGACACGTCTTGAGAATTTTGATAACAGTGTGAGTATGGTTGATGGAAGCAACTCTGTCACTGACGAAGATGCAGAAGACGCTGCTACAAGTGCAGTGTTCTCGCAGCTGGTAAATCCACGTGGAAGATGA 2523 0.413 MVMMKLVLVVVTVITFLVNVSFALYTPHDNYLIACGSSKSINFQDRVFVPDSQHSSLVLKTGNSIVVASSNSSVVPSPIYQSARIFSEKGSYRFDVQQGRHWIRLYFYPLPNTSHNLTSASITVVSDDFVLLSNFTFRNYSGSYMFREYAVNVTSDSLTVTFIPLNGSVAFVNAIEVVSMPDDLFVDQALSLSPLAPFSGLSELAFETVYRLNIGGTLLTAENDTLGRTWENDQKYLHVNSSVTNVSASPSSIRYRPGVTAETAPNWVYATAEAMGDANVANSNFNITWVFDVDPSFSYFVRLHFCDIMSKAMNTLVFNVFINTDIAIGSLDLSSMTNDLAVPYFKDFVSNASSDNTLTVSVGPDTMADITNATMSGLEIMKISNALKSLDGLSSVKSLLPSSKSNMNKIGIIAGSAAGALVALAFVGLCFFLLAGRNSKSPQEGGHSWLPLPLYGNSQTMTKMSTTSQKSGGTASFISSTNLGRFFTFQEILDATNKFDEKLLLGVGGFGRVYRGILDDGTTVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLSWKQRLDICIGAARGLHYLHTGASQSIIHRDVKTTNILLDDSFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQVNIAEWAMNWQKKGMLDQIMDPQLVGKVNPASLKKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQETATALTEPEDNSTNHITGIQLTRLENFDNSVSMVDGSNSVTDEDAEDAATSAVFSQLVNPRGR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03238 840 SUPERFAMILY Protein kinase-like (PK-like) 476 770 IPR011009 -
Trre12g03238 840 Gene3D Phosphorylase Kinase; domain 1 457 574 - -
Trre12g03238 840 ProSitePatterns Protein kinases ATP-binding region signature. 505 527 IPR017441 GO:0005524
Trre12g03238 840 ProSiteProfiles Protein kinase domain profile. 499 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03238 840 SMART serkin_6 499 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03238 840 FunFam Putative receptor-like protein kinase 30 181 - -
Trre12g03238 840 FunFam Receptor-like protein kinase FERONIA 205 385 - -
Trre12g03238 840 CDD STKc_IRAK 505 770 - -
Trre12g03238 840 Gene3D - 204 385 - -
Trre12g03238 840 Gene3D - 30 181 - -
Trre12g03238 840 PANTHER OS07G0166700 PROTEIN 485 776 IPR045272 GO:0004714|GO:0006468
Trre12g03238 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Trre12g03238 840 FunFam receptor-like protein kinase FERONIA 460 574 - -
Trre12g03238 840 FunFam Receptor-like protein kinase FERONIA 575 791 - -
Trre12g03238 840 Pfam Malectin-like domain 33 383 IPR024788 -
Trre12g03238 840 Gene3D Transferase(Phosphotransferase) domain 1 575 794 - -
Trre12g03238 840 Pfam Protein tyrosine and serine/threonine kinase 504 762 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03238 Trre-Chr12 47553458 47555980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03238 23 777 Receptor kinase-like Gene Family AT2G21480 54.096 0.0 828
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre12g03238 Malectin_like 1.1e-41 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03238 - - gmx:100809700 1321.61