Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03228 ATGGAAAGTACCGATTCATCGACCGGTTCGCAACAACCGAATCTTCTGCCTGGATTCCGTTTCCACCCGACCGATGAAGAGCTGGTTGTTCATTATCTCAAGAAAAAAGCAGCCTCAGCTCCTTTACCGGTAGCCATCATCGCCGAAGTTGATCTCTACAAATTCGATCCGTGGGAGCTACCAGCTAAGGCAACGTTTGGAGAGCAAGAGTGGTATTTCTTTAGTCCAAGGGATAGGAAGTATCCAAATGGTGCTAGGCCAAACAGAGCAGCAACTTCTGGTTATTGGAAAGCAACTGGTACTGATAAGCCCGTTTTAACTTCTGGTGGAACACAAAAAGTTGGTGTGAAAAAAGCTTTGGTTTTCTATGGTGGAAAACCACCAAGAGGAATCAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAATAAGCCTAATAATAGGCCTCCTGGTTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTATGCCGAATCTACAAGAAAAGCAACACACATCGGTCACCGGTGGAACATGATAGGGAAGATTCGATGGATGATATGATAGGCGGAGTACCTCCATCAATCAACGTGGGTCAAATGAATGCTGCAACAAGGTTTCATAATTTTTCAAAGATGTCAACAAATAGCTACAACAATGCATTGTTGGAAAATGATCAAAATTTATTAGAAGGAATGATGTTAAGCAACAATAATTTAGGAGTTTCAAATTCAAAGGCAGAGTTATCTTTTGTACCAACTATGACAACATCTTCAAATGCTAATTCACCTTCAAAAAGAACACTTTCTTCACTTTATAATTGGAATGATGAAGATGTTGCAGCTCAAGTTGGTACTTCATCATCTAACAAAAGGTTCAATTTGGAAAGTGTTGTGAGAAATGATCAAGATAATGGAACTGTTGCTACTTCTTTTGCTTCATTGCTTAATAATCTCCCTCAAACTCCTTCATTGCATCAACAACAACAACAAACAATGTTGGGATCAATACCATATCAAATTCAAGGGATGAATTGGTATGGATAA 1068 0.3961 MESTDSSTGSQQPNLLPGFRFHPTDEELVVHYLKKKAASAPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPVEHDREDSMDDMIGGVPPSINVGQMNAATRFHNFSKMSTNSYNNALLENDQNLLEGMMLSNNNLGVSNSKAELSFVPTMTTSSNANSPSKRTLSSLYNWNDEDVAAQVGTSSSNKRFNLESVVRNDQDNGTVATSFASLLNNLPQTPSLHQQQQQTMLGSIPYQIQGMNWYG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03228 355 FunFam NAC transcription factor 56 24 181 - -
Trre12g03228 355 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Trre12g03228 355 PANTHER NAC TRANSCRIPTION FACTOR 56 15 232 - -
Trre12g03228 355 SUPERFAMILY NAC domain 7 176 IPR036093 GO:0003677|GO:0006355
Trre12g03228 355 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Trre12g03228 355 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03228 Trre-Chr12 47304845 47306404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03228 1 354 NAC Transcription Factor Family AT3G15510 53.457 2.64e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03228 NAM 4.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03228 - - vra:106763825 555.058