Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03227 ATGGGAATTCAAGAAAAAGATCCACTTTCACAATTAAGTTTACCACCTGGTTTTAGATTTTACCCAACCGATGAAGAACTTCTTGTTCAATATCTATGTCGTAAAGTTGCTGGTCATCATTTTTCTCTTCAAATTATTGCTGAAATTGATCTCTACAAATTTGACCCATGGGTTCTACCAAGTAAGGCAATTTTTGGTGAGAAAGAATGGTATTTTTTTAGTCCAAGAGATAGGAAGTATCCTAATGGAACAAGACCCAATAGAGTAGCTGGATCTGGGTATTGGAAAGCTACTGGAACTGATAAGATTATCACAAATGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTGTTCTATGTTGGTAAAGCTCCTAAAGGCACCAAAACTAATTGGATTATGCATGAATATCGTCTACTTGATTCTTCTCGCAACAACGGCGGCACTAAGTTGGATGATTGGGTTCTATGTAGAATATACAAGAAAAATTCAAGTGCACAAAAAACCAATCCAAACGGCGTCGTTTCAAACGGAGAATACACTCAATACAGCAACGGTTCATCTTCGTCATCATCCTCACACCTCGATGATGTTCTCGAATCACTTCCACAAATCGACGACCGTTGTTTCATGCTTCCACGTGTCAATTCATTAAGAACTATGCAGCATCATCATCAACAACAACAAGAACAGAAACTTAATCTTCAAAATCTGAATTCTGCAAATAATAACAGTTTCATGGATTGGTCAAATCCATCATCAATTTTGAACACTGTAACAGATCAGTTTCAAGGAACACAAACTCAAGGAATGATGAATTTTGGTGGATGTAATGACCTTTATGCCCCTAATGTATCCAATTTATGTCAAGTGGACTCTTCCGTTATTACAGATAAAACTAGTAAGATACCCGTGCATCCAACTGAGGAGGAGATTCAGAGTGGGGCAAGAGCGAACCGAGTTGAAAATTTTAATTCTGAATTTTTTCAACGCGGTTCAAATGAATTTACTCAAGGAATGAGTTTTTCTAATTCGGTTGACCCGTTTGGGTTTAGATACCCGGTTCAACCAGTTGGATTCGGGTTTGGACAATGA 1095 0.3753 MGIQEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGTRPNRVAGSGYWKATGTDKIITNEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRNNGGTKLDDWVLCRIYKKNSSAQKTNPNGVVSNGEYTQYSNGSSSSSSSHLDDVLESLPQIDDRCFMLPRVNSLRTMQHHHQQQQEQKLNLQNLNSANNNSFMDWSNPSSILNTVTDQFQGTQTQGMMNFGGCNDLYAPNVSNLCQVDSSVITDKTSKIPVHPTEEEIQSGARANRVENFNSEFFQRGSNEFTQGMSFSNSVDPFGFRYPVQPVGFGFGQ 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03227 364 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Trre12g03227 364 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Trre12g03227 364 FunFam NAC domain-containing protein 72-like 23 167 - -
Trre12g03227 364 MobiDBLite consensus disorder prediction 167 196 - -
Trre12g03227 364 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Trre12g03227 364 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 237 - -
Trre12g03227 364 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03227 Trre-Chr12 47216437 47218143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03227 1 251 NAC Transcription Factor Family AT3G15500 69.323 8.20e-121 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre12g03227 NAM 7.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03227 - - tpra:123895211 654.825