Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03226 ATGGAGCAAGATATAGAAGATATTGAGTCTCAAACAATTTATAAAGAGACATTGCATGAAGAAACACCTGAATTCTTGCATAATGGAAAACGTCCGGTGATTCTTAAGTTTGATGAAGTTGTGCACAAAATCAAAGATAAAAAAGGAGGATTATTTAAGAAGAAAACAAAAGTAGAAGAGAAAACAATACTAAAAGGAGTAACAGGAATTGTTAAACCAGGTGAAATGTTAGCAATGTTAGGTCCATCAGGAAGTGGAAAAACAACATTGTTAACAGCATTAGGAGGAAGACTTGGTGGAAAACTTTATGGAAAAATAACATATAATGAAAAACCATTTTCAAATACAATAAAAAGAAACACAGGTTTTGTTACACAAGATGATGTTCTTTATCCTCATTTAACAGTAACAGAAACACTTGTTTTTACAGCACTTTTAAGATTACCAAATAGTGTTCCAAAAGAAGAGAAAGTTTCACATGCAAAAAATGTTATTGATCAACTTGGTTTAACAAAGTGTAAAGATAGCATTGTTGGAAGTGCTTATCTAAGAGGTGTTTCTGGTGGAGAAAGAAAAAGGGTTAGTATTGGACAAGAATTGCTTATAAATCCTAGTTTATTGTTTCTTGATGAACCTACTTCTGGTTTGGATTCTACAACAGCTCAAAGGATTGTTTCAACTTTGTGGGATTTAGCAAGAGGTGGAAGGACTATTGTTATGACAATACATCAACCTTCAAGTAGATTATATTATATGTTTCATAAAGTTTTGTTGCTTGCAGAAGGGAATGTTGTTTACTTTGGAAAAGGGTCTGAAGCTATTGAATATTTTTCTAATATTGGTTATTCTCCTGCTGTGGCTATGAACCCTTCAGATTTCCTTTTGGATCTTGCAAATGGTATCTACACTGATGAGATGAATCATGACCATAACATAGACAAGCAAAAATTGATTTCAGCATTTAAAAGTAACTCTGAAACACAGTCCAAACCAGAAGAATATCAAGAAATCAATGACTCTGATACAAGTCAGGGGAGATTTCAAGAGACAGGTTCTGGAAAATGGCCTACTAGTTGGTCACAACAATTCTTTGTATTGTTAAGAAGAGATGTCAAAGAGAGAAAATATGAATCATTCTCTGGCTTAAGGATTGGTCAAGTCCTTGTGGTTGCACTTATGTCAGGATTACTTTGGTATAAATCTGATATGTCACATTTGCAGGATCAGATTGGACTACTATTCTTCATAACAGGCTTTTGGGGTTTTTTCCCTCTCTTCCAAGCAATCTTCACATTCCCACAAGAACTAATGATGCTAGAAAAAGAAAGATCCTCAGGAATGTATAGACTCTCCTCCTACTTCATTTCGAGAATGGTAGCCGACCTACCGATGGAACTAGTCCTCCCAACAATCTTCCTTCTCATAACATATTTCATGGCAGGACTCAAAGCAACAATGATAAATTTCTTTCAAACACTTTTCAGCCTCTTACTCAATGTGTTAGTTGCACAAGGTTTAGGCCTTGCACTTGGTGCTGTAGTACTTGATCAAAAATCAGCAACAACACTTGCATCAGTGATCATGCTATGTTTCTTACTTGCTGGTGGATTTTATGTTCAGAATGTTCCAAAGTTTATTGCTTGGGTGAAGTATATTTCTATTAGCTACTATACATATCAACTATTTATTGGGTCACAATATCATAGTGGTGAGACATACCCTTGTTCTAGTGGACAGTGTCCTATTGAAGAGTTTCCTCCTATAAAACAAATGGGGTTTGATATCAATGGACAAGGGTTAGCTGCAATGGCTCTTGTTATAATGCTAATAGGTTATAGACTTATAGCTTATATTGCTCTTATGAGGATTGGAGTCACAAAGAAAAAGGCTTAG 1893 0.3502 MEQDIEDIESQTIYKETLHEETPEFLHNGKRPVILKFDEVVHKIKDKKGGLFKKKTKVEEKTILKGVTGIVKPGEMLAMLGPSGSGKTTLLTALGGRLGGKLYGKITYNEKPFSNTIKRNTGFVTQDDVLYPHLTVTETLVFTALLRLPNSVPKEEKVSHAKNVIDQLGLTKCKDSIVGSAYLRGVSGGERKRVSIGQELLINPSLLFLDEPTSGLDSTTAQRIVSTLWDLARGGRTIVMTIHQPSSRLYYMFHKVLLLAEGNVVYFGKGSEAIEYFSNIGYSPAVAMNPSDFLLDLANGIYTDEMNHDHNIDKQKLISAFKSNSETQSKPEEYQEINDSDTSQGRFQETGSGKWPTSWSQQFFVLLRRDVKERKYESFSGLRIGQVLVVALMSGLLWYKSDMSHLQDQIGLLFFITGFWGFFPLFQAIFTFPQELMMLEKERSSGMYRLSSYFISRMVADLPMELVLPTIFLLITYFMAGLKATMINFFQTLFSLLLNVLVAQGLGLALGAVVLDQKSATTLASVIMLCFLLAGGFYVQNVPKFIAWVKYISISYYTYQLFIGSQYHSGETYPCSSGQCPIEEFPPIKQMGFDINGQGLAAMALVIMLIGYRLIAYIALMRIGVTKKKA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03226 630 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524|GO:0016887
Trre12g03226 630 MobiDBLite consensus disorder prediction 326 354 - -
Trre12g03226 630 Gene3D - 53 280 IPR027417 -
Trre12g03226 630 Pfam ABC-2 type transporter 361 567 IPR013525 GO:0016020|GO:0140359
Trre12g03226 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 279 IPR027417 -
Trre12g03226 630 MobiDBLite consensus disorder prediction 340 354 - -
Trre12g03226 630 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 286 IPR003439 GO:0005524
Trre12g03226 630 SMART AAA_5 73 271 IPR003593 GO:0016887
Trre12g03226 630 Pfam ABC transporter 64 214 IPR003439 GO:0005524
Trre12g03226 630 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 617 - -
Trre12g03226 630 FunFam ABC transporter G family member 22 51 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03226 Trre-Chr12 47199049 47204195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03226 63 300 Calmodulin-binding Proteins AT2G36910 26.423 7.18e-12 67.0