Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03145 ATGGGTTGCATGTGTTGCAAGCCTTCCGCAATTGAGGATAGTAAGGAGAGTCCAAGAGAGCGATTATCGAACAAGTCTGTGCTCGATTCGCGTGTGTCTAGAGGAGCTTCATCGAGGAGGGAGGAAGCATATAGGGTGAAGGATAGAAGTGATAATAACAATGATGCGAGAACGGCCTTGATTGATAAGCAAGGGAACGGTTCTGTTAGGGTTCATGGTGATAATTTTGAAAGGAAGAAGGAGAAAATGGAGTATGTTGTTGCTCAACATCCGGGGATTGGTAGTGTTCCCAAGGCTATGGAAGGCGAACATGTTGCGGCTGGATGGCCGTCATGGCTGGCAGCTGTTGCTGGTGAAGCAATCAAGGGATGGCTTCCACGACGTGCGGATTCTTTTGAGAAGTTGGATAAAATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTACGCCGGCTTGATCATCCAAATGTCATAAAACTTGAAGGCTTGGTTACATCAAGAATGTCGTGCAGTTTATACCTTGTTTTTGAGTACATGGAGCATGACTTGGCCGGGCTTGCATCACATCCCGGACTCAAGTTTACAGAATCACAGGTTAAATGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCCGTGGTGTACTGCATCGTGACATTAAGGGTTCCAATCTTTTGATCGACAATAACGGAGTATTAAAAATTGCAGATTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAAATCAGCCACTCACAAGCCGAGTTGTCACACTTTGGTATAGGCCACCTGAACTTTTACTTGGAGCTACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGGTGCATACTTGCTGAGCTGTATGCCGGCAAGCCTATTATGCCTGGTAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTTTGTGGTTCGCCTTCAGAGGACTATTGGAGAAAATCAAAATTGCCTCATGCAACGATATTTAAGCCTCAACAGCCTTATAGGCGTTGTGTTGCTGAAACATTCAAAGACTTTCCTGCACCTGCAATAGAACTGATAGAAACACTTTTGTCCATAGACCCTGCTGATCGTGGTACTTCAGCATCTGCTTTGATAAGTGAGTTCTTCTCAACAAAGCCTTTACCTTGTGATCCTTCAAGCTTGCCAAAGTATCCTCCTAGCAAAGAATTTGATGCTAAAGTACGGGATGAAGAAGCTAGAAGACAAGGAGCAACAGGAAGCAAGGGCCAGAGACATGATCCCGAGAGAAGAGGAGTAAGAGAATCTCGAGCTATTCCTGCACCTGATGCCAATGCTGAACTGGTCGTGTCAATGCAGAAGAGACAAGGTCAGAACTATTCTCAAAGCAGGAGTGAGAAGTTTAATCCTCATCCTGAAGAAGTTGCTTCTGGTTTTCCCATTGAACCACCTAGACCATCACAAGCCGCAGAAGCAACTGTGGATCCCCAGGCAAATCAACATAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGTGCTGCATGGGCGAAAGCCGGGAAGAATCAGGACGATGCTCCAAAGGTTTCAATGGGGGGCGACTTGTCTACAATCTCTGGTTTAGTTGCTGCTAGGAGGAGTATGCTGTCCGACGATCGTAGAGAAAGTGCTGGATCGTCACAAGTGGAGGCTCCAAAACTAATTACAAGGTTCCCAGGTTCCTTCAAGGAGGCCTCTGAATCATTGATGCAACAAAATCAAAATCAGAAGCATCATGTACATGCTTCTCAAAAGGAAGAAGCGAAAGGCAGTAACAAAGACCCAAATCTTGTTGGTTATGGATCAAAGGGTTATAAAATTCATTATTCTGGTCCATTACTCGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCACGACCGGCAAATTCAAGAAGCGGTCAGAAGAGCACGTCTAGACAAGGCAAAAATGCGAAGACTCCAAGCTGACCAGATGAGCAATTCATTATTTGTTTCTGGTCGTTGA 2127 0.4448 MGCMCCKPSAIEDSKESPRERLSNKSVLDSRVSRGASSRREEAYRVKDRSDNNNDARTALIDKQGNGSVRVHGDNFERKKEKMEYVVAQHPGIGSVPKAMEGEHVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPNQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPAPAIELIETLLSIDPADRGTSASALISEFFSTKPLPCDPSSLPKYPPSKEFDAKVRDEEARRQGATGSKGQRHDPERRGVRESRAIPAPDANAELVVSMQKRQGQNYSQSRSEKFNPHPEEVASGFPIEPPRPSQAAEATVDPQANQHKRASHSGPLTHRAAWAKAGKNQDDAPKVSMGGDLSTISGLVAARRSMLSDDRRESAGSSQVEAPKLITRFPGSFKEASESLMQQNQNQKHHVHASQKEEAKGSNKDPNLVGYGSKGYKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRARLDKAKMRRLQADQMSNSLFVSGR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03145 708 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Trre12g03145 708 MobiDBLite consensus disorder prediction 34 55 - -
Trre12g03145 708 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
Trre12g03145 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Trre12g03145 708 MobiDBLite consensus disorder prediction 435 470 - -
Trre12g03145 708 CDD STKc_CDK9_like 132 416 - -
Trre12g03145 708 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03145 708 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Trre12g03145 708 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Trre12g03145 708 MobiDBLite consensus disorder prediction 7 55 - -
Trre12g03145 708 MobiDBLite consensus disorder prediction 484 499 - -
Trre12g03145 708 MobiDBLite consensus disorder prediction 423 567 - -
Trre12g03145 708 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03145 708 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03145 708 PANTHER CELL DIVISION PROTEIN KINASE 130 422 - -
Trre12g03145 708 MobiDBLite consensus disorder prediction 611 645 - -
Trre12g03145 708 SUPERFAMILY Protein kinase-like (PK-like) 126 424 IPR011009 -
Trre12g03145 708 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Trre12g03145 708 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03145 Trre-Chr12 45944086 45949069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03145 124 448 Core Cell Cycle Gene Families AT5G10270 53.959 2.96e-119 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre12g03145 Pkinase 5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03145 - - gmx:100792173 1289.25