Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03124 ATGTGGATTGTGTACAAAGGCGACACTGAAGATCATCCTGAGATGTTGGTTCGCGATATTAAGGGGGACACTATCCAAGTCACTATTATGAACAATGATATTGTTGAATGGAAACCAAAGCTTTCTGAAGGGAAGACGTATCAAATGAGCAACTTTAGAGTTTTCGACAATGATACTGATTACAAAATGTGTACACACCAGTTTCGGCTAACATTGGTTGGTGGTACAAAAATTGAAGAAGCTGTGATGCCTGATATCCCAGCTACCAAGTTTAACTTCAAGGATTTTTCAGAAATTCAATCTGGGAAATACACTCCAGACTTATTAGTTGATGCTATTGGAGTTATACATGAATTCCGCAAATGTGTTACCGCATCAGCCACAAGGAAAGCTCAAGTCTCATTCACTCTTAAGGACTTAAGGGACACTATTATGGATTGCACTCTTTGGGACTCACTGTCTGTTGAGTTCATGTCACTTTACAACCAACGATCTGATTCTAGGAGTTTTGTACTATTATGA 522 0.3889 MWIVYKGDTEDHPEMLVRDIKGDTIQVTIMNNDIVEWKPKLSEGKTYQMSNFRVFDNDTDYKMCTHQFRLTLVGGTKIEEAVMPDIPATKFNFKDFSEIQSGKYTPDLLVDAIGVIHEFRKCVTASATRKAQVSFTLKDLRDTIMDCTLWDSLSVEFMSLYNQRSDSRSFVLL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03124 173 Gene3D - 84 172 IPR012340 -
Trre12g03124 173 SUPERFAMILY Nucleic acid-binding proteins 91 156 IPR012340 -
Trre12g03124 173 SUPERFAMILY Nucleic acid-binding proteins 9 81 IPR012340 -
Trre12g03124 173 CDD RPA1_DBD_A_like 1 78 - -
Trre12g03124 173 Gene3D - 4 82 IPR012340 -
Trre12g03124 173 Pfam Domain of unknown function DUF223 15 105 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03124 Trre-Chr12 45589790 45590590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03124 19 154 Core DNA Replication Machinery Family AT5G08020 27.586 4.78e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03124 - - tpra:123884216 228.024