Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03121 ATGGTGTTACTTAGAAGTTTCTTGTTGACACTATTTCAATGTTGTGTCTTATCTTTGTTTTTTTGTTTGTCTTTGAGTCTTGAAAATGGAACAAAATCATGTGATCCTAGTGATTTATCAGCTTTGAAGGATTTTGCAGGAAACCTTACAAATAGTTCAATTGTGAAAGCATGGTCTAATGATAGTGTTTGTTGCAATTGGATTGGAGTTGTGTGCGGTGATAACAATGGAGAATCTGTTAATAGAGTTACCAAGTTGATCCTTTCTGAGATGAGTCTAAATGGAACAATTTCACCTTCTTTAGCAAAACTTGATCAACTCAATGTATTGAATCTTTCATTCAATCATCTTGAGGGTGAATTGCCTTCAGAATTTTCCAAGTTGAAGATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTATCAGGACATGTTGCTGATAAACTTTCTGGTTTGAATTCCATTCAAGTGTTGAATATTTCAAGCAATTCATTTTCTGGAGAGTTTTTCCACTTTGTGGAATTTCCACATCTACTTGCTCTCAATGTCAGTAACAATTCATTCACAGGTAGATTCAGTTCTCAACTTTGTAATTCTTCAAAGAATCTTCACACACTTCATTTATCTTCAAATCATTTTGATGGTAATCTTGAAGGTTTGAACAACTGTTCTAAATCTCTTCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCTTTTACCAGATTCTTTGTATTCAATGTTATCTTTGGAGCAATTATCACTCTCTGCCAACAATTTTTCTGGCATGTTAAGCAATGAGTTAAGTAAGCTTTCTAGCCTAAAATCTCTTGTGGTTTCTGCAAACCGTTTTTCAGGCGAAATTCCAAATGTTTTTGAGAATTTTTTGCAGTTAGAACAATTTGTAGCACATGCTAATTCATTTTCTGGATCATTACCTTCCACTTTGGCTTTATGCACTAAGCTTAGAGTTCTCGATCTTAAGAATAATTCATTGTCCGGTTCAATCGATCTTAATTTCACTGGTTTGTCTAATCTTTGTTCACTCGATCTTGCTAGTAATCATTTTACCGGACCACTTCCTAGTTCATTGTCCAATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGCTATGCCAATTTATCGTCTCTTTTGTTTGTATCGTTTTCGAACAATAGCTTAGTGAATTTATCTGGTGCACTTTCTGTTCTTCAGAAGTGCAAAAACCTCACAACTCTAATCCTCACTAAGAATTTCCGCGGCGAAGAAATTCCACAACTTGTACCATCAGCAGGATTTGAGAGTCTTATGGTGTTAGCACTTGGAAACTGTGGTCTTAAAAGTTATATTCCTTCGTGGCTATTAAAATGCAAGAAATTGGCGGTCCTTGATTTGTCTTGGAACTCATTGAATGGTAGTATTCCTTCGTGGATTGGTGAAATGGACAGGTTGTTCTATTTGGATTTCTCGAACAATTCTCTCACGGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGACTGGTGTGTTCAAATTGTCGAAGACCGAATTTTGCTTCTTATGCTTTCATTCCTCTCTTTGTGAAGAGAAATACTAGTGCTAGTGGTTTGCAATATAATCAAGCTTCTAGTTTCCCTCCTTCAATTTTATTGAGCAATAATATGTTAAATGGAAGTATATGGCCCGAAATCGGTAAATTGAAAGCACTTCATGTGTTGGATTTCAGCAGGAACAATATAAGCGGCACAATTCCGAGTAGTATTTCGGAGATGGAGAATTTGGAAACATTGGATTTATCTTATAATGATCTATCTGGAACAATCCCTCCTTCATTTAACAATCTCACATTCTTGTCGAAGTTCAGTGTGGCACATAATCACTTGCAAGGACCGATTCCAAGTGGAGGTCAGTTTCTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGACATTGATATCGATAGTACTCGATGCAAAGTTGTTAACGACACGAGACCAAATTTGCCTTCTGGTTCGTCAAAAAAAATTAGTAGAAGCAGTGTAGTTGGCATAACTATCAGCATAGGGGTAGGGCTTGCTTTGTTGCTTTCAATTATTGTGCTAAGAATGTCAAAGAGGGAAGAAGATAAATCTATCGATAACTTTGACGAGGAGATGAATACTAGGAGGTCACACAGGTTATCATCTGAAGCATTTGTTTCTTCGAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCTGATTTGTTGAAAGCAACAAACAACTTCAACCAGGCAAACATTGTTGGCTGTGGTGGCTTCGGTCTTGTTTACAAGGCGTATCTTCCGAATGGCATGAAAGCGGCCGTCAAGAGGCTTTCTGGCGACTGTGGTCAGATGGAACGCGAGTTCCAAGCCGAAGTTGAAGCCCTCTCGAGAGCTCAACACAAGAACCTTGTTTCTCTTAAAGGCTATTGTCGGCATGGCAACGACCGATTGCTAATTTACTCGTATATGGAGAATGGTAGCTTGGATTATTGGCTTCATGAGTGTGTGGATGCAAATTCAGCTCTGAAATGGGATATACGACTCAAGATTGCACAAGGTGCGGCTCGTGGATTAGCTTACTTGCACAAGGGGTGTGAACCGTTCATAGTCCACCGTGATGTTAAATCTAGCAACATACTTTTGGATGATAAGTTTGAAGCTCATTTGGCCGATTTCGGTCTCTCAAGACTGCTTTCACCGTACGATACTCATGTCACAACAGACTTAGTAGGAACATTAGGGTATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCCGCGGCGATGTCTATAGTTTCGGCGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATCAAAGGGAAAAATTGCAGGAACTTGGTGTCTTGGGTTTATCAGATGAAATATGAAAAGAAGGAGCAAGAAATTTTTGATCAAGCCATTTGGGAAAAGGAGAGGGAGAAACAACTATTGGATGTTCTTGGCATTGCTTGTAAATGTCTAGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAATGTAAGATTTGATGGCATTCAACAATGA 3174 0.3837 MVLLRSFLLTLFQCCVLSLFFCLSLSLENGTKSCDPSDLSALKDFAGNLTNSSIVKAWSNDSVCCNWIGVVCGDNNGESVNRVTKLILSEMSLNGTISPSLAKLDQLNVLNLSFNHLEGELPSEFSKLKMLKFLDLSYNMLSGHVADKLSGLNSIQVLNISSNSFSGEFFHFVEFPHLLALNVSNNSFTGRFSSQLCNSSKNLHTLHLSSNHFDGNLEGLNNCSKSLQRLHLDSNSFSGLLPDSLYSMLSLEQLSLSANNFSGMLSNELSKLSSLKSLVVSANRFSGEIPNVFENFLQLEQFVAHANSFSGSLPSTLALCTKLRVLDLKNNSLSGSIDLNFTGLSNLCSLDLASNHFTGPLPSSLSNCHELKVLSLARNGLNGSIPESYANLSSLLFVSFSNNSLVNLSGALSVLQKCKNLTTLILTKNFRGEEIPQLVPSAGFESLMVLALGNCGLKSYIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGEMDRLFYLDFSNNSLTGEIPKSLTELKGLVCSNCRRPNFASYAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLNGSIWPEIGKLKALHVLDFSRNNISGTIPSSISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDIDIDSTRCKVVNDTRPNLPSGSSKKISRSSVVGITISIGVGLALLLSIIVLRMSKREEDKSIDNFDEEMNTRRSHRLSSEAFVSSKLVLFQNSDCKDLTVSDLLKATNNFNQANIVGCGGFGLVYKAYLPNGMKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDANSALKWDIRLKIAQGAARGLAYLHKGCEPFIVHRDVKSSNILLDDKFEAHLADFGLSRLLSPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYEKKEQEIFDQAIWEKEREKQLLDVLGIACKCLDQDPRQRPSIEMVVSWLDNVRFDGIQQ 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03121 1057 CDD STKc_IRAK 782 1049 - -
Trre12g03121 1057 ProSitePatterns Serine/Threonine protein kinases active-site signature. 898 910 IPR008271 GO:0004672|GO:0006468
Trre12g03121 1057 Gene3D Phosphorylase Kinase; domain 1 734 851 - -
Trre12g03121 1057 SUPERFAMILY L domain-like 34 302 - -
Trre12g03121 1057 FunFam Leucine-rich repeat receptor-like kinase 37 148 - -
Trre12g03121 1057 Gene3D Ribonuclease Inhibitor 299 369 IPR032675 -
Trre12g03121 1057 FunFam Leucine-rich repeat receptor-like protein kinase 852 1056 - -
Trre12g03121 1057 SMART serkin_6 776 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03121 1057 SUPERFAMILY L domain-like 221 510 - -
Trre12g03121 1057 SUPERFAMILY L domain-like 444 645 - -
Trre12g03121 1057 PANTHER LEUCINE RICH REPEAT KINASE 2 281 1049 - -
Trre12g03121 1057 FunFam Phytosulfokine receptor 1 739 851 - -
Trre12g03121 1057 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Trre12g03121 1057 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 337 - -
Trre12g03121 1057 SMART LRR_typ_2 225 247 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 272 295 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 578 601 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 344 368 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 104 127 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 602 625 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 248 271 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 128 152 IPR003591 -
Trre12g03121 1057 SMART LRR_typ_2 392 415 IPR003591 -
Trre12g03121 1057 ProSiteProfiles Protein kinase domain profile. 776 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03121 1057 PRINTS Leucine-rich repeat signature 131 144 - -
Trre12g03121 1057 PRINTS Leucine-rich repeat signature 602 615 - -
Trre12g03121 1057 FunFam Tyrosine-sulfated glycopeptide receptor 1 341 679 - -
Trre12g03121 1057 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Trre12g03121 1057 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Trre12g03121 1057 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Trre12g03121 1057 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Trre12g03121 1057 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Trre12g03121 1057 SUPERFAMILY Protein kinase-like (PK-like) 757 1047 IPR011009 -
Trre12g03121 1057 Gene3D Transferase(Phosphotransferase) domain 1 852 1053 - -
Trre12g03121 1057 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Trre12g03121 1057 Gene3D Ribonuclease Inhibitor 370 674 IPR032675 -
Trre12g03121 1057 ProSitePatterns Protein kinases ATP-binding region signature. 782 804 IPR017441 GO:0005524
Trre12g03121 1057 Pfam Protein kinase domain 777 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03121 1057 Gene3D Ribonuclease Inhibitor 33 298 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03121 Trre-Chr12 45527915 45531088 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03121 65 1053 Receptor kinase-like Gene Family AT1G55610 34.301 2.61e-160 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre12g03121 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03121 - - mtr:25487312 1810.81