Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03120 ATGGTGTTACTTAGAAGTTTCTTGTTGACACTATTTCAATGTTGTGTCTTATCTTTGTTTTTTTGTTTGTCTTTGAGTCTTGAAAATGGAACAAAATCATGTGATCCTAGTGATTTATCAGCTTTGAAGGATTTTGCAGGAAACCTTACAAATAGTTCAATTGTGAAAGCATGGTCTAATGATAGTGTTTGTTGCAATTGGATTGGAGTTGTGTGCGGTGATAACAATGGAGAATCTGTTAATAGAGTTACCAAGTTGATCCTTTCTGAGATGAGTCTAAATGGAACAATTTCACCTTCTTTAGCAAAACTTGATCAACTCAATGTATTGAATCTTTCATTCAATCATCTTGAGGGTGAATTGCCTTCAGAATTTTCCAAGTTGAAGATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTATCAGGACATGTTGCTGATAAACTTTCTGGTTTGAATTCCATTCAAGTGTTGAATATTTCAAGCAATTCATTTTCTGGAGAGTTTTTCCACTTTGTGGAATTTCCACATCTACTTGCTCTCAATGTCAGTAACAATTCATTCACAGGTAGATTCAGTTCTCAACTTTGTAATTCTTCAAAGAATCTTCACACACTTCATTTATCTTCAAATCATTTTGATGGTAATCTTGAAGGTTTGAACAACTGTTCTAAATCTCTTCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCTTTTACCAGATTCTTTGTATTCAATGTTATCTTTGGAGCAATTATCACTCTCTGCCAACAATTTTTCTGGCATGTTAAGCAATGAGTTAAGTAAGCTTTCTAGCCTAAAATCTCTTGTGGTTTCTGCAAACCGTTTTTCAGGCGAAATTCCAAATGTTTTTGAGAATTTTTTGCAGTTAGAACAATTTGTAGCACATGCTAATTCATTTTCTGGATCATTACCTTCCACTTTGGCTTTATGCACTAAGCTTAGAGTTCTCGATCTTAAGAATAATTCATTGTCCGGTTCAATCGATCTTAATTTCACTGGTTTGTCTAATCTTTGTTCACTCGATCTTGCTAGTAATCATTTTACCGGACCACTTCCTAGTTCATTGTCCAATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGCTATGCCAATTTATCGTCTCTTTTGTTTGTATCGTTTTCGAACAATAGCTTAGTGAATTTATCTGGTGCACTTTCTGTTCTTCAGAAGTGCAAAAACCTCACAACTCTAATCCTCACTAAGAATTTCCGCGGCGAAGAAATTCCACAACTTGTACCATCAGCAGGATTTGAGAGTCTTATGGTGTTAGCACTTGGAAACTGTGGTCTTAAAAGTTATATTCCTTCGTGGCTATTAAAATGCAAGAAATTGGCGGTCCTTGATTTGTCTTGGAACTCATTGAATGGTAGTATTCCTTCGTGGATTGGTGAAATGGACAGGTTGTTCTATTTGGATTTCTCGAACAATTCTCTCACGGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGACTGGTGTGTTCAAATTGTCGAAGACCGAATTTTGCTTCTTATGCTTTCATTCCTCTCTTTGTGAAGAGAAATACTAGTGCTAGTGGTTTGCAATATAATCAAGCTTCTAGTTTCCCTCCTTCAATTTTATTGAGCAATAATATGTTAAATGGAAGTATATGGCCCGAAATCGGTAAATTGAAAGCACTTCATGTGTTGGATTTCAGCAGGAACAATATAAGCGGCACAATTCCGAGTAGTATTTCGGAGATGGAGAATTTGGAAACATTGGATTTATCTTATAATGATCTATCTGGAACAATCCCTCCTTCATTTAACAATCTCACATTCTTGTCGAAGTTCAGTGTGGCACATAATCACTTGCAAGGACCGATTCCAAGTGGAGGTCAGTTTCTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGACATTGATATCGATAGTACTCGATGCAAAGTTGTTAACGACACGAGACCAAATTTGCCTTCTGGTTCGTCAAAAAAAATTAGTAGAAGCAGTGTAGTTGGCATAACTATCAGCATAGGGGTAGGGCTTGCTTTGTTGCTTTCAATTATTGTGCTAAGAATGTCAAAGAGGGAAGAAGATAAATCTATCGATAACTTTGACGAGGAGATGAATACTAGGAGGTCACACAGGTTATCATCTGAAGCATTTGTTTCTTCGAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCTGATTTGTTGAAAGCAACAAACAACTTCAACCAGGCAAACATTGTTGGCTGTGGTGGCTTCGGTCTTGTTTACAAGGCGTATCTTCCGAATGGCATGAAAGCGGCCGTCAAGAGGCTTTCTGGCGACTGTGACTTAGTAGGAACATTAGGGTATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCCGCGGCGATGTCTATAGTTTCGGCGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATCAAAGGGAAAAATTGCAGGAACTTGGTGTCTTGGGTTTATCAGATGAAATATGAAAAGAAGGAGCAAGAAATTTTTGATCAAGCCATTTGGGAAAAGGAGAGGGAGAAACAACTATTGGATGTTCTTGGCATTGCTTGTAAATGTCTAGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAATGTAAGATTTGATGGCATTCAACAATGA 2796 0.3745 MVLLRSFLLTLFQCCVLSLFFCLSLSLENGTKSCDPSDLSALKDFAGNLTNSSIVKAWSNDSVCCNWIGVVCGDNNGESVNRVTKLILSEMSLNGTISPSLAKLDQLNVLNLSFNHLEGELPSEFSKLKMLKFLDLSYNMLSGHVADKLSGLNSIQVLNISSNSFSGEFFHFVEFPHLLALNVSNNSFTGRFSSQLCNSSKNLHTLHLSSNHFDGNLEGLNNCSKSLQRLHLDSNSFSGLLPDSLYSMLSLEQLSLSANNFSGMLSNELSKLSSLKSLVVSANRFSGEIPNVFENFLQLEQFVAHANSFSGSLPSTLALCTKLRVLDLKNNSLSGSIDLNFTGLSNLCSLDLASNHFTGPLPSSLSNCHELKVLSLARNGLNGSIPESYANLSSLLFVSFSNNSLVNLSGALSVLQKCKNLTTLILTKNFRGEEIPQLVPSAGFESLMVLALGNCGLKSYIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGEMDRLFYLDFSNNSLTGEIPKSLTELKGLVCSNCRRPNFASYAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLNGSIWPEIGKLKALHVLDFSRNNISGTIPSSISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDIDIDSTRCKVVNDTRPNLPSGSSKKISRSSVVGITISIGVGLALLLSIIVLRMSKREEDKSIDNFDEEMNTRRSHRLSSEAFVSSKLVLFQNSDCKDLTVSDLLKATNNFNQANIVGCGGFGLVYKAYLPNGMKAAVKRLSGDCDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYEKKEQEIFDQAIWEKEREKQLLDVLGIACKCLDQDPRQRPSIEMVVSWLDNVRFDGIQQ 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03120 931 SUPERFAMILY Protein kinase-like (PK-like) 766 926 IPR011009 -
Trre12g03120 931 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Trre12g03120 931 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Trre12g03120 931 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Trre12g03120 931 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Trre12g03120 931 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Trre12g03120 931 SUPERFAMILY RNI-like 224 528 - -
Trre12g03120 931 SMART LRR_typ_2 225 247 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 272 295 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 578 601 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 344 368 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 104 127 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 602 625 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 248 271 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 128 152 IPR003591 -
Trre12g03120 931 SMART LRR_typ_2 392 415 IPR003591 -
Trre12g03120 931 FunFam Tyrosine-sulfated glycopeptide receptor 1 341 679 - -
Trre12g03120 931 SUPERFAMILY L domain-like 34 301 - -
Trre12g03120 931 ProSiteProfiles Protein kinase domain profile. 545 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03120 931 PRINTS Leucine-rich repeat signature 602 615 - -
Trre12g03120 931 PRINTS Leucine-rich repeat signature 131 144 - -
Trre12g03120 931 Gene3D Phosphorylase Kinase; domain 1 733 810 - -
Trre12g03120 931 Gene3D Ribonuclease Inhibitor 561 664 IPR032675 -
Trre12g03120 931 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Trre12g03120 931 Pfam Protein kinase domain 811 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03120 931 Gene3D Ribonuclease Inhibitor 153 406 IPR032675 -
Trre12g03120 931 FunFam Leucine-rich repeat receptor-like kinase 37 148 - -
Trre12g03120 931 Gene3D Ribonuclease Inhibitor 37 152 IPR032675 -
Trre12g03120 931 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Trre12g03120 931 ProSitePatterns Protein kinases ATP-binding region signature. 782 804 IPR017441 GO:0005524
Trre12g03120 931 SMART serkin_6 776 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03120 931 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 337 - -
Trre12g03120 931 Gene3D Transferase(Phosphotransferase) domain 1 811 927 - -
Trre12g03120 931 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 812 922 - -
Trre12g03120 931 Coils Coil 930 931 - -
Trre12g03120 931 Gene3D Ribonuclease Inhibitor 415 535 IPR032675 -
Trre12g03120 931 SUPERFAMILY L domain-like 440 729 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03120 Trre-Chr12 45527915 45531088 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03120 9 718 Miscellaneous Gene Families AT1G17240 40.055 9.76e-149 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre12g03120 Pkinase 3.9e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03120 - - mtr:25487312 1334.32