Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03119 ATGGTGTTACTTAGAAGTTTCTTGTTGACACTATTTCAATGTTGTGTCTTATCTTTGTTTTTTTGTTTGTCTTTGAGTCTTGAAAATGGAACAAAATCATGTGATCCTAGTGATTTATCAGCTTTGAAGGATTTTGCAGGAAACCTTACAAATAGTTCAATTGTGAAAGCATGGTCTAATGATAGTGTTTGTTGCAATTGGATTGGAGTTGTGTGCGGTGATAACAATGGAGAATCTGTTAATAGAGTTACCAAGTTGATCCTTTCTGAGATGAGTCTAAATGGAACAATTTCACCTTCTTTAGCAAAACTTGATCAACTCAATGTATTGAATCTTTCATTCAATCATCTTGAGGGTGAATTGCCTTCAGAATTTTCCAAGTTGAAGATGTTGAAGTTTCTTGATTTGAGCTATAACATGTTATCAGGACATGTTGCTGATAAACTTTCTGGTTTGAATTCCATTCAAGTGTTGAATATTTCAAGCAATTCATTTTCTGGAGAGTTTTTCCACTTTGTGGAATTTCCACATCTACTTGCTCTCAATGTCAGTAACAATTCATTCACAGGTAGATTCAGTTCTCAACTTTGTAATTCTTCAAAGAATCTTCACACACTTCATTTATCTTCAAATCATTTTGATGGTAATCTTGAAGGTTTGAACAACTGTTCTAAATCTCTTCAAAGGTTGCATTTGGATTCCAATTCATTTTCTGGCCTTTTACCAGATTCTTTGTATTCAATGTTATCTTTGGAGCAATTATCACTCTCTGCCAACAATTTTTCTGGCATGTTAAGCAATGAGTTAAGTAAGCTTTCTAGCCTAAAATCTCTTGTGGTTTCTGCAAACCGTTTTTCAGGCGAAATTCCAAATGTTTTTGAGAATTTTTTGCAGTTAGAACAATTTGTAGCACATGCTAATTCATTTTCTGGATCATTACCTTCCACTTTGGCTTTATGCACTAAGCTTAGAGTTCTCGATCTTAAGAATAATTCATTGTCCGGTTCAATCGATCTTAATTTCACTGGTTTGTCTAATCTTTGTTCACTCGATCTTGCTAGTAATCATTTTACCGGACCACTTCCTAGTTCATTGTCCAATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAGGAATGGTTTAAATGGTTCTATACCTGAAAGCTATGCCAATTTATCGTCTCTTTTGTTTGTATCGTTTTCGAACAATAGCTTAGTGAATTTATCTGGTGCACTTTCTGTTCTTCAGAAGTGCAAAAACCTCACAACTCTAATCCTCACTAAGAATTTCCGCGGCGAAGAAATTCCACAACTTGTACCATCAGCAGGATTTGAGAGTCTTATGGTGTTAGCACTTGGAAACTGTGGTCTTAAAAGTTATATTCCTTCGTGGCTATTAAAATGCAAGAAATTGGCGGTCCTTGATTTGTCTTGGAACTCATTGAATGGTAGTATTCCTTCGTGGATTGGTGAAATGGACAGGTTGTTCTATTTGGATTTCTCGAACAATTCTCTCACGGGAGAAATACCGAAAAGTTTGACAGAGTTGAAGGGACTGGTGTGTTCAAATTGTCGAAGACCGAATTTTGCTTCTTATGCTTTCATTCCTCTCTTTGTGAAGAGAAATACTAGTGCTAGTGGTTTGCAATATAATCAAGCTTCTAGTTTCCCTCCTTCAATTTTATTGAGCAATAATATGTTAAATGGAAGTATATGGCCCGAAATCGGTAAATTGAAAGCACTTCATGTGTTGGATTTCAGCAGGAACAATATAAGCGGCACAATTCCGAGTAGTATTTCGGAGATGGAGAATTTGGAAACATTGGATTTATCTTATAATGATCTATCTGGAACAATCCCTCCTTCATTTAACAATCTCACATTCTTGTCGAAGTTCAGTGTGGCACATAATCACTTGCAAGGACCGATTCCAAGTGGAGGTCAGTTTCTAAGCTTCCCTAGTTCAAGCTTTGAGGGTAATTTGGGACTTTGCAGGGACATTGATATCGATAGTACTCGATGCAAAGTTGTTAACGACACGAGACCAAATTTGCCTTCTGGTTCGTCAAAAAAAATTAGTAGAAGCAGTGTAGTTGGCATAACTATCAGCATAGGGGTAGGGCTTGCTTTGTTGCTTTCAATTATTGTGCTAAGAATGTCAAAGAGGGAAGAAGATAAATCTATCGATAACTTTGACGAGGAGATGAATACTAGGAGGTCACACAGGTTATCATCTGAAGCATTTGTTTCTTCGAAGTTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTTCTGATTTGTTGAAAGCAACAAACAACTTCAACCAGGCAAACATTGTTGGCTGTGGTGGCTTCGGTCTTGTTTACAAGGCGTATCTTCCGAATGGCATGAAAGCGGCCGTCAAGAGGCTTTCTGGCGACTGTGGAACATTAGGGTATATTCCTCCAGAATATAGTCAGACACTGACAGCAACATTCCGCGGCGATGTCTATAGTTTCGGCGTTGTTCTTCTCGAGCTTCTTACCGGTAGAAGGCCTGTGGAAGTCATCAAAGGGAAAAATTGCAGGAACTTGGTGTCTTGGGTTTATCAGATGAAATATGAAAAGAAGGAGCAAGAAATTTTTGATCAAGCCATTTGGGAAAAGGAGAGGGAGAAACAACTATTGGATGTTCTTGGCATTGCTTGTAAATGTCTAGACCAAGATCCAAGGCAAAGACCTTCTATTGAAATGGTTGTTTCATGGCTTGATAATGTAAGATTTGATGGCATTCAACAATGA 2787 0.3746 MVLLRSFLLTLFQCCVLSLFFCLSLSLENGTKSCDPSDLSALKDFAGNLTNSSIVKAWSNDSVCCNWIGVVCGDNNGESVNRVTKLILSEMSLNGTISPSLAKLDQLNVLNLSFNHLEGELPSEFSKLKMLKFLDLSYNMLSGHVADKLSGLNSIQVLNISSNSFSGEFFHFVEFPHLLALNVSNNSFTGRFSSQLCNSSKNLHTLHLSSNHFDGNLEGLNNCSKSLQRLHLDSNSFSGLLPDSLYSMLSLEQLSLSANNFSGMLSNELSKLSSLKSLVVSANRFSGEIPNVFENFLQLEQFVAHANSFSGSLPSTLALCTKLRVLDLKNNSLSGSIDLNFTGLSNLCSLDLASNHFTGPLPSSLSNCHELKVLSLARNGLNGSIPESYANLSSLLFVSFSNNSLVNLSGALSVLQKCKNLTTLILTKNFRGEEIPQLVPSAGFESLMVLALGNCGLKSYIPSWLLKCKKLAVLDLSWNSLNGSIPSWIGEMDRLFYLDFSNNSLTGEIPKSLTELKGLVCSNCRRPNFASYAFIPLFVKRNTSASGLQYNQASSFPPSILLSNNMLNGSIWPEIGKLKALHVLDFSRNNISGTIPSSISEMENLETLDLSYNDLSGTIPPSFNNLTFLSKFSVAHNHLQGPIPSGGQFLSFPSSSFEGNLGLCRDIDIDSTRCKVVNDTRPNLPSGSSKKISRSSVVGITISIGVGLALLLSIIVLRMSKREEDKSIDNFDEEMNTRRSHRLSSEAFVSSKLVLFQNSDCKDLTVSDLLKATNNFNQANIVGCGGFGLVYKAYLPNGMKAAVKRLSGDCGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVSWVYQMKYEKKEQEIFDQAIWEKEREKQLLDVLGIACKCLDQDPRQRPSIEMVVSWLDNVRFDGIQQ 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03119 928 SMART LRR_typ_2 225 247 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 272 295 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 578 601 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 344 368 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 602 625 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 104 127 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 248 271 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 128 152 IPR003591 -
Trre12g03119 928 SMART LRR_typ_2 392 415 IPR003591 -
Trre12g03119 928 FunFam Tyrosine-sulfated glycopeptide receptor 1 341 679 - -
Trre12g03119 928 SUPERFAMILY L domain-like 307 664 - -
Trre12g03119 928 Gene3D Phosphorylase Kinase; domain 1 751 808 - -
Trre12g03119 928 Gene3D Ribonuclease Inhibitor 33 299 IPR032675 -
Trre12g03119 928 SUPERFAMILY Protein kinase-like (PK-like) 764 922 IPR011009 -
Trre12g03119 928 Gene3D Transferase(Phosphotransferase) domain 1 809 922 - -
Trre12g03119 928 SUPERFAMILY L domain-like 34 302 - -
Trre12g03119 928 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 811 919 - -
Trre12g03119 928 ProSiteProfiles Leucine-rich repeat profile. 604 626 IPR001611 GO:0005515
Trre12g03119 928 Pfam Protein kinase domain 809 916 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03119 928 PRINTS Leucine-rich repeat signature 602 615 - -
Trre12g03119 928 PRINTS Leucine-rich repeat signature 131 144 - -
Trre12g03119 928 FunFam Leucine-rich repeat receptor-like kinase 37 148 - -
Trre12g03119 928 Gene3D Ribonuclease Inhibitor 300 368 IPR032675 -
Trre12g03119 928 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Trre12g03119 928 ProSitePatterns Protein kinases ATP-binding region signature. 782 804 IPR017441 GO:0005524
Trre12g03119 928 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 337 - -
Trre12g03119 928 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Trre12g03119 928 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Trre12g03119 928 Pfam Leucine rich repeat 106 164 IPR001611 GO:0005515
Trre12g03119 928 Pfam Leucine rich repeat 322 381 IPR001611 GO:0005515
Trre12g03119 928 Pfam Leucine rich repeat 580 639 IPR001611 GO:0005515
Trre12g03119 928 SMART serkin_6 696 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03119 928 ProSiteProfiles Protein kinase domain profile. 545 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03119 928 Gene3D Ribonuclease Inhibitor 369 678 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03119 Trre-Chr12 45527915 45531088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03119 9 718 Miscellaneous Gene Families AT1G17240 40.192 9.81e-149 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre12g03119 Pkinase 4.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03119 - - mtr:25487312 1337.01