Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03112 ATGAAAAGGTATCATCGTCGCCATAAGGTTTGTGAGTTTCATTCTAAGGTACCTTATGTGATGGTTGCAGGGTTGAGCCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGAGCTTATAGAGTTTGATGAAGCTAAAAGAAGTTGCCGAAAACGCTTAGCGAGACACAATGAACGGCGTCGCAAAAGCACTACCGGAAATTGTAGTGAAAGAAGGTGTACTGGCATGGAAGGGCAGGATATTAATGATGGTGATTGGAGAAACATTCATATGAACATGACAAGTAGTTCTGGTCACGAGAATATCCATAAATTTTTAATTTCAAATGAATATCCATAA 339 0.3982 MKRYHRRHKVCEFHSKVPYVMVAGLSQRFCQQCSRFHELIEFDEAKRSCRKRLARHNERRRKSTTGNCSERRCTGMEGQDINDGDWRNIHMNMTSSSGHENIHKFLISNEYP 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03112 112 Gene3D - 1 50 IPR036893 GO:0003677|GO:0005634
Trre12g03112 112 Pfam SBP domain 2 62 IPR004333 GO:0003677
Trre12g03112 112 SUPERFAMILY SBT domain 2 66 IPR036893 GO:0003677|GO:0005634
Trre12g03112 112 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 64 IPR044817 GO:0003677
Trre12g03112 112 ProSiteProfiles Zinc finger SBP-type profile. 1 63 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03112 Trre-Chr12 45386038 45396165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03112 2 65 SBP-box Gene Family AT2G33810 78.125 5.38e-33 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre12g03112 SBP 9.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03112 - - gmx:100815775 145.206