Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03110 ATGAGATTAACCAAATTGCACAGGGACAATGATTTGCACAGGTTACTTTTCATGCCTAATGGCCTTCCAGACGGAGAAGGAGGATCACAAGTAGAAAAAGATGATGATGATGATGATGATGATGAAAATAAGATTGGTCAAGGAACTTACAACAGTGTTTACAGAGCTCGCGATCTTGAAACTAACAAAATTGTTGCTTTGAAGAAGGTTAAATTCACTAATATAGATCCTGAAAGTGTTCGTTTTATGGCAAGAAAAATCATTCTCCTAAGAAGGCTTGATCATCCAAATGTCATGAAACTTGAAGGAATGATTACTTCAAAGCTTTCTGGTAGCTTGTACCTTATTTTCGAATATATGGAACATGATCTTACAGGCCTTTCAACAATGCCTGCCAACAAGATTACTCAACCACAGATCGGCTCAGATGCTCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTTCGGCAAAGATGGGATTCAAGCATCATTAAAACTACAGGAGTCAACCGCATCAATCTTGAACCAGAAGCGGAGTCCATTCTCGTCCAATTCAAAGTTTTCTGCCCCAATATTATCAGTGAGGCCTACTTATGA 600 0.3883 MRLTKLHRDNDLHRLLFMPNGLPDGEGGSQVEKDDDDDDDDENKIGQGTYNSVYRARDLETNKIVALKKVKFTNIDPESVRFMARKIILLRRLDHPNVMKLEGMITSKLSGSLYLIFEYMEHDLTGLSTMPANKITQPQIGSDALPFRSAFRDVIFRQRWDSSIIKTTGVNRINLEPEAESILVQFKVFCPNIISEAYL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03110 199 Gene3D Phosphorylase Kinase; domain 1 40 135 - -
Trre12g03110 199 FunFam probable serine/threonine-protein kinase At1g54610 30 121 - -
Trre12g03110 199 PANTHER CELL DIVISION PROTEIN KINASE 43 130 - -
Trre12g03110 199 SUPERFAMILY Protein kinase-like (PK-like) 43 129 IPR011009 -
Trre12g03110 199 Pfam Protein kinase domain 42 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03110 199 MobiDBLite consensus disorder prediction 17 47 - -
Trre12g03110 199 SMART serkin_6 39 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03110 199 ProSiteProfiles Protein kinase domain profile. 39 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03110 Trre-Chr12 45367810 45370178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03110 44 140 Core Cell Cycle Gene Families AT5G10270 41.071 7.29e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre12g03110 Pkinase 2.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03110 - K08819 cam:101495256 168.703