Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03109 ATGGTGGGCTCAGGAGCAGCATCAGATAGGAGCAAAGAAGCTGTTGGTATGATGGCCCTTCATGAGGCCCTCAGAACCGTCTGTCTTAACTCAGACTGGACTTACTCTGTCTTCTGGACTATTCGTCCTCGCCCAAGAGTTAGAGGTGGTAATGGCTGTAAGGTTGGAGATGATAATGGAAGCTTGATGTTGATGTGGGAAGATGGATTTTGCCGTGGAAGAGATTGTGTTGGAGATCATATTGATGGTGGTGGTGGTGGAGGAGAAGATCCTGTTAGAAAATCTTTCAGCAAAATGTCCATTCAGTTGTATAATTATGGAGAAGGGTTGATGGGGAAAGTTGCATCTGATAAATGTCACAAGTGGGTCTTTAAAGAGCCAACAGAATGTGAACCTAATATCTCTAACTACTGGCAAAGTTCCTTTGATGCTCTTCCACCTGAATGGACAGACCAATTTGAGTCAGGCATTCAGACCATAGCTGTAATTCAAGCTGGACATGGTCTTCTTCAACTTGGTTCTTGTAAGATTATTCCTGAAGATCTTCATTTTGTCCTAAGAATGAGACACACATTTGAATCATTAGGATACCAATCTGGTTTCTACCTTTCACAACTCTTCTCATCAACAAGGAACACTTCATCATCAACTTCACTTCCTTCAAAACCATCTTCAACAATTCCAATTAGGCCACCTCCACCAATCTTCAACTGGAGTCAAAGACCACTAACTTCTCCTTCATCAATGCTATCCTCACCCAATTTTCAACAACATGCAACTAGACTTGGTTTTCCACAAACCAAAGATGAAACACACATGTTCCTAATGCCTCATGCATCATCACATGAAACTCCTAGAATGGAAGACATGATGCGAGGAGGAGGCGGAGGTGGAGGAGGAGAACATCATGAAAATGACATTAAATGGCCAAATGGTTTGTCTTTCTTTAATGCTTTAACCGGTAGAGCCGATGATGCTAAGCTTTTGTTTAATCCAGATGGTTTAGGTGGAAAGCAAGGTGATCATGATCATGATCATGGTCATGATCATAATCAACAACATCATCATACTCTTAATCAAAATCCTAATTCAGATGTTTCAAACCCAAATGAGTTCTTGAGCTTAGATAGTCATCATGAAGGTGCAAGAAAAATGGACAAGTTTAAGAGAAGTTTCACTTTACCTACAAGAGTTGCTTCATCATCTTCATCTACTTCAATGGATCATCATCAACAACAAGGTGTGGAGTATAGGAATTCAGAAGGTGGTAGCATGTACTCAGATGTTATGGAGACATTTTTGGAGTGA 1308 0.4075 MVGSGAASDRSKEAVGMMALHEALRTVCLNSDWTYSVFWTIRPRPRVRGGNGCKVGDDNGSLMLMWEDGFCRGRDCVGDHIDGGGGGGEDPVRKSFSKMSIQLYNYGEGLMGKVASDKCHKWVFKEPTECEPNISNYWQSSFDALPPEWTDQFESGIQTIAVIQAGHGLLQLGSCKIIPEDLHFVLRMRHTFESLGYQSGFYLSQLFSSTRNTSSSTSLPSKPSSTIPIRPPPPIFNWSQRPLTSPSSMLSSPNFQQHATRLGFPQTKDETHMFLMPHASSHETPRMEDMMRGGGGGGGGEHHENDIKWPNGLSFFNALTGRADDAKLLFNPDGLGGKQGDHDHDHGHDHNQQHHHTLNQNPNSDVSNPNEFLSLDSHHEGARKMDKFKRSFTLPTRVASSSSSTSMDHHQQQGVEYRNSEGGSMYSDVMETFLE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03109 435 MobiDBLite consensus disorder prediction 394 423 - -
Trre12g03109 435 MobiDBLite consensus disorder prediction 330 374 - -
Trre12g03109 435 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 20 74 IPR025610 -
Trre12g03109 435 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 94 192 IPR025610 -
Trre12g03109 435 PANTHER GB|AAF34833.1 1 435 IPR044170 -
Trre12g03109 435 MobiDBLite consensus disorder prediction 356 374 - -
Trre12g03109 435 MobiDBLite consensus disorder prediction 394 420 - -
Trre12g03109 435 MobiDBLite consensus disorder prediction 213 232 - -
Trre12g03109 435 MobiDBLite consensus disorder prediction 337 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03109 Trre-Chr12 45357872 45360642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03109 21 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 31.707 1.49e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03109 - - psat:127086298 684.485