Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03108 ATGGATGAATACTATTGCGATGTATACCCAAAGTTTTCACCAAATGATTTTGATACACAAAATACTTCATCATGTCCCAATGACAAGTACTTCAATGTAGAGTTTGAGTGCACAAATATGTACGTTTTGAGTGCTAGAAACTTTCAAACTATTAATCACATAAAGCGTCACATATTTTCACATGTCTCCAAGGATAAAATAATGCAAGAAACTACCATTGTATCATGGCTTTTTCAAATGGAAGTCCCTCAAGATGCTTTTAAGTTTGTGGTGGCAAAAATCATGGAGTGCGCTCGTCATATGGTTAGCGCACACAAGAATTTAAGGGTTCTTCCTATTCAAGTCAATCTTGTTGTTACAAGAGCTAGTGAAGATGAAGATGAAAGTGATGAAGATGATGGAAGTGATGAAAGCAACGAAAGCGATGAAGCGGAGAGATCAGAGGTGGTGAACGTCGAAAAAGAGAAGAATTGTGCTATTTGTTTTGAAAATTTTAATTTTAATGTAGGTGTTCCCATGCCATGTTTGCACGTGTTTCATATAAAATGTATTCGCGGTTGGTTAGAGAAAGGTAACTCTTGTCCTTTGTGTAGACATCAATTGCCTTAA 609 0.3629 MDEYYCDVYPKFSPNDFDTQNTSSCPNDKYFNVEFECTNMYVLSARNFQTINHIKRHIFSHVSKDKIMQETTIVSWLFQMEVPQDAFKFVVAKIMECARHMVSAHKNLRVLPIQVNLVVTRASEDEDESDEDDGSDESNESDEAERSEVVNVEKEKNCAICFENFNFNVGVPMPCLHVFHIKCIRGWLEKGNSCPLCRHQLP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03108 202 MobiDBLite consensus disorder prediction 124 143 - -
Trre12g03108 202 ProSiteProfiles Zinc finger RING-type profile. 158 198 IPR001841 -
Trre12g03108 202 Pfam Ring finger domain 157 198 IPR001841 -
Trre12g03108 202 SMART ring_2 158 197 IPR001841 -
Trre12g03108 202 MobiDBLite consensus disorder prediction 122 150 - -
Trre12g03108 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 202 IPR013083 -
Trre12g03108 202 SUPERFAMILY RING/U-box 157 201 - -
Trre12g03108 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 105 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03108 Trre-Chr12 45354163 45354771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03108 151 202 C3H Transcription Factor Family AT5G01980 50.943 4.79e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03108 - - mtr:11431540 211.46