Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre12g03108 | ATGGATGAATACTATTGCGATGTATACCCAAAGTTTTCACCAAATGATTTTGATACACAAAATACTTCATCATGTCCCAATGACAAGTACTTCAATGTAGAGTTTGAGTGCACAAATATGTACGTTTTGAGTGCTAGAAACTTTCAAACTATTAATCACATAAAGCGTCACATATTTTCACATGTCTCCAAGGATAAAATAATGCAAGAAACTACCATTGTATCATGGCTTTTTCAAATGGAAGTCCCTCAAGATGCTTTTAAGTTTGTGGTGGCAAAAATCATGGAGTGCGCTCGTCATATGGTTAGCGCACACAAGAATTTAAGGGTTCTTCCTATTCAAGTCAATCTTGTTGTTACAAGAGCTAGTGAAGATGAAGATGAAAGTGATGAAGATGATGGAAGTGATGAAAGCAACGAAAGCGATGAAGCGGAGAGATCAGAGGTGGTGAACGTCGAAAAAGAGAAGAATTGTGCTATTTGTTTTGAAAATTTTAATTTTAATGTAGGTGTTCCCATGCCATGTTTGCACGTGTTTCATATAAAATGTATTCGCGGTTGGTTAGAGAAAGGTAACTCTTGTCCTTTGTGTAGACATCAATTGCCTTAA | 609 | 0.3629 | MDEYYCDVYPKFSPNDFDTQNTSSCPNDKYFNVEFECTNMYVLSARNFQTINHIKRHIFSHVSKDKIMQETTIVSWLFQMEVPQDAFKFVVAKIMECARHMVSAHKNLRVLPIQVNLVVTRASEDEDESDEDDGSDESNESDEAERSEVVNVEKEKNCAICFENFNFNVGVPMPCLHVFHIKCIRGWLEKGNSCPLCRHQLP | 202 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre12g03108 | 202 | MobiDBLite | consensus disorder prediction | 124 | 143 | - | - | |
Trre12g03108 | 202 | ProSiteProfiles | Zinc finger RING-type profile. | 158 | 198 | IPR001841 | - | |
Trre12g03108 | 202 | Pfam | Ring finger domain | 157 | 198 | IPR001841 | - | |
Trre12g03108 | 202 | SMART | ring_2 | 158 | 197 | IPR001841 | - | |
Trre12g03108 | 202 | MobiDBLite | consensus disorder prediction | 122 | 150 | - | - | |
Trre12g03108 | 202 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 202 | IPR013083 | - | |
Trre12g03108 | 202 | SUPERFAMILY | RING/U-box | 157 | 201 | - | - | |
Trre12g03108 | 202 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 105 | 202 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre12g03108 | Trre-Chr12 | 45354163 | 45354771 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre12g03108 | 151 | 202 | C3H Transcription Factor Family | AT5G01980 | 50.943 | 4.79e-11 | 59.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre12g03108 | - | - | mtr:11431540 | 211.46 |