Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre12g03100 ATGGAGGATCTAGCAGGTCTAGTCGAGGCAACAGGATCGAGATTTACTTCGTTGGAGCTTATTGGGCAGGGATCATTTGGCGATGTATATAAAGGGTTTGACAAGGAGCTCAACAAAGAAGTGGCCATCAAAGTGATTGATTTGGAAGAATCAGAGGATGATATTGACGATATTCAGAAGGAAATTTCTGTTCTGTCACAATGTCGATGTCCATACATTACGGAGTATTATGGTTCTTTTCTCAATCAGACTAAACTATGGATAATAATGGAGTATATGGCTGGCGGCTCTGTTGCTGATCTACTCCAATCAGGTCCTCCCCTAGATGAAATGTCAATTGCTTATATTCTTCGTGACTTGTTGCATGCTGTCGATTACCTTCATAGTGAAGGCAAAATCCATAGAGACATTAAAGCTGCAAACATTTTATTGTCAGAGAATGGTGATGTAAAGGTTGCAGATTTTGGTGTTTCTGCACAATTGACAAGGACTATATCAAGGAGAAAGACATTTGTAGGCACACCATTCTGGATGGCGCCTGAGGTTATTCAGAACTCAGATGGATATAATGAGAAGGCAGATATCTGGTCTCTGGGGATCACTGCAATTGAGATGGCAAAGGGGGAGCCTCCACTTGCTGATCTTCATCCCATGAGGGTGCTTTTCATCATACCCCGAGAAAATCCTCCACAGCTAGATGAGCATTTTTCTCGACCCATGAAAGAATTTGTTTCATCATGTTTGAAGAAGGTTCCGGCTGAGAGGCCAAGTGCTAAGGAACTTCTCAAAGACCGTTTTATTCGCAATGCTAGGAAGAGTCCAAAGCTTTTGGAAAGATTAAGGGAGCGTCCAAAATATCAAGTTAAGGAAGACCTGGAGACAGCTAGAAATGGCCAAAGAGGGATTGGTGAGGGATCAGACACTATGAAGGTGGCAAGAGATTCTAAAGTTGATGAAATCAATCGACCCAGCAGTCAGGGTAAGACCCCGAAAAGTTCTGAATGGGACTTTAGCATTGGTGAATCAGAGGGTACTGGAACCTTTCGAAGTGTTTCACGGCCACCACAGTCTAGAGATAAGAAAACTGAAGGTTCATATAATCAGCTTACCCAAAGAAAAGCTCTAGACGCTGGCTATCAAGGAGGATATGCCAATAGAAGTTCATTCAATCAATCACTTGAAAAAGATCTTAGAGCTCCTTACCTTCACGAGCAGTCGGATAATCAGCTTGAAGATGATGAGTTATCTGGGAATGGATCAGGAACCGTTGTTATACGCTCTCCCAAAGGAATATCAAGGACATCTGCGTTTCGTGAGCATATCTCCCAGTCCCAGGATGAATTATCTGAGAATGGATCAGGAACTGTTGTTATTCGATCTCCGAAAGGATCAAAGCCATCTGTGTTTCGTGAGAGCTCCCAGTCCAGCAGCAGCTATGCTTCTTTTGAAGATACTTCCACAAGTGGAACCATTGTTTTACGTAGTCAACAAGATGATTCTGATTCTCCACGGACTCCAAGGTCCCGGCTAGGACTTTATGACAGAAATTCAAATGTTTCACTTGAAGATAGTGCTGCAAACCTAGCCGAGGCAAAGGCTGCTATCCAAGGAGGGCAACGAAAAGTGAATGCTCGGGAAAGACATTCGCGGGGAAAAATCAATAGTGATAATATACAGGAAAGCAAAAGAGACCAAATGACTAGCAGCACTGATTCTTCCAGATCATATCGTGAATACATTGATGCACAAAGGGGCATGGTACGATCAAATTATGCCGGTGATGAGGAAGAAAGTGCTAGAATAATATCATCGTCGGCGCCATTATCAGTTTTGCTTATTCCTTCATTAAAAGAGGCTATTGCTGATGATCCAGAAGGGCAAATCGTGCGCGCAGTTATCAATTCTTTAATAAACATGGAGGGTACAAAGCCTAGATCCTCTGCTGTTTTTGTCAAAAAATTGCTTCAAAGATTAGCAAGTTCAAAGGAAGATTCATTGAAGGACCTTCAAGGACTAGCAAGCCAATTATTCAGCAAAGCCAAGTCAACCGAAGAAATTCAAAATGCGGAAGCTGATAACCGAAGGAAACAACATAACAAGGAACCTCATCCAAATAGCAACTTAAGCCCTCTTGCAAGATTTCTTCTATCAAGATGGCAAGGCCAAACTTCACGGGATCTAAATCAATCTTGA 2193 0.4236 MEDLAGLVEATGSRFTSLELIGQGSFGDVYKGFDKELNKEVAIKVIDLEESEDDIDDIQKEISVLSQCRCPYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIAYILRDLLHAVDYLHSEGKIHRDIKAANILLSENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSDGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSSCLKKVPAERPSAKELLKDRFIRNARKSPKLLERLRERPKYQVKEDLETARNGQRGIGEGSDTMKVARDSKVDEINRPSSQGKTPKSSEWDFSIGESEGTGTFRSVSRPPQSRDKKTEGSYNQLTQRKALDAGYQGGYANRSSFNQSLEKDLRAPYLHEQSDNQLEDDELSGNGSGTVVIRSPKGISRTSAFREHISQSQDELSENGSGTVVIRSPKGSKPSVFRESSQSSSSYASFEDTSTSGTIVLRSQQDDSDSPRTPRSRLGLYDRNSNVSLEDSAANLAEAKAAIQGGQRKVNARERHSRGKINSDNIQESKRDQMTSSTDSSRSYREYIDAQRGMVRSNYAGDEEESARIISSSAPLSVLLIPSLKEAIADDPEGQIVRAVINSLINMEGTKPRSSAVFVKKLLQRLASSKEDSLKDLQGLASQLFSKAKSTEEIQNAEADNRRKQHNKEPHPNSNLSPLARFLLSRWQGQTSRDLNQS 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre12g03100 730 MobiDBLite consensus disorder prediction 408 427 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 439 499 - -
Trre12g03100 730 Coils Coil 48 68 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 560 575 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 679 712 - -
Trre12g03100 730 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03100 730 MobiDBLite consensus disorder prediction 322 353 - -
Trre12g03100 730 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Trre12g03100 730 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03100 730 MobiDBLite consensus disorder prediction 541 559 - -
Trre12g03100 730 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre12g03100 730 MobiDBLite consensus disorder prediction 307 321 - -
Trre12g03100 730 FunFam serine/threonine-protein kinase dst1 isoform X1 12 300 - -
Trre12g03100 730 CDD STKc_MST3_like 13 285 - -
Trre12g03100 730 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 11 679 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 685 702 - -
Trre12g03100 730 Coils Coil 679 701 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 538 575 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 439 516 - -
Trre12g03100 730 SUPERFAMILY Protein kinase-like (PK-like) 13 293 IPR011009 -
Trre12g03100 730 MobiDBLite consensus disorder prediction 288 373 - -
Trre12g03100 730 Gene3D Transferase(Phosphotransferase) domain 1 12 300 - -
Trre12g03100 730 MobiDBLite consensus disorder prediction 412 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre12g03100 Trre-Chr12 45139513 45150953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre12g03100 1 727 MAP Kinase Kinase Kinase Kinase AT3G15220 61.180 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Trre12g03100 Pkinase 8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre12g03100 K08838 - gmx:100815042 1078.93